Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq189 203 5e-48 seq121 201 2e-47 seq102 196 8e-46 seq164 194 3e-45 seq64 185 1e-42 seq171 167 4e-37 seq179 159 5e-35 seq124 136 6e-28 seq81 100 4e-17 >seq189 Length=512050 Score = 203 bits (224), Expect = 5e-48 Identities = 201/260 (77%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||| || || |||||||| |||||||||||||| || ||| Sbjct 190313 GCCAAGCGCCATCGCAAAGTTCTACGTGACAACATCCAGGGAATCACCAAGCCCGCCATC 190372 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||||||||||||| |||| || | |||| || |||| | Sbjct 190373 CGTCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGACT 190432 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 190433 CGTGGAGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAG 190492 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| |||||||||| | || | || || Sbjct 190493 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTATGCCCTCAAGAGACAGGGA 190552 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 190553 CGTACCCTCTACGGTTTCGG 190572 >seq121 Length=426384 Score = 201 bits (222), Expect = 2e-47 Identities = 179/224 (80%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||| || || |||||||| |||||||||||||| || ||| Sbjct 61272 GCCAAGCGCCATCGCAAAGTTCTACGTGACAACATCCAGGGAATCACCAAGCCCGCCATC 61213 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||||||||||||| |||| ||| | |||| || |||| | Sbjct 61212 CGTCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACT 61153 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || |||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 61152 CGTGGAGTTCTCAAAGTCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAG 61093 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| || | |||||||||||| ||||||| |||||||||| Sbjct 61092 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTATGC 61049 >seq102 Length=1079475 Score = 196 bits (216), Expect = 8e-46 Identities = 180/225 (80%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || ||||||||||||||||||||||| || || Sbjct 711009 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAAGGAATCACCAAGCCCGCCAT 711067 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||||||||||||| |||| ||| | |||| || |||| Sbjct 711068 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGAC 711127 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| ||| || || ||| ||| Sbjct 711128 CCGTGGAGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGA 711187 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || | |||||||||||| ||||||| ||||||| || Sbjct 711188 GCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGC 711232 >seq164 Length=186736 Score = 194 bits (214), Expect = 3e-45 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||| || ||||||||||||||||| ||||| || ||| Sbjct 105497 GCCAAGCGCCATCGCAAGGTACTTCGTGACAACATCCAAGGAATCACGAAGCCCGCCATC 105556 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||||||||||||||| |||||| |||| ||| | |||| || |||| | Sbjct 105557 CGCCGTCTCGCTCGTCGTGGTGGAGTGAAGCGTATCTCCGGACTTATCTACGAGGAGACT 105616 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||||||| ||| |||||||| ||| || || ||| |||| Sbjct 105617 CGTGGAGTTCTTAAGGTCTTCCTCGAGAACGTTATCCGTGACGCCGTCACCTACTGCGAG 105676 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| | ||||| |||||||||| | || ||||| ||| Sbjct 105677 CACGCCAAGAGAAAGACCGTCACTGCTATGGACGTCGTCTATGCTCTCAAGCGTCAGGGC 105736 Query 16673 CG 16674 || Sbjct 105737 CG 105738 >seq64 Length=308971 Score = 185 bits (204), Expect = 1e-42 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | ||||| || ||||||||||||||||| ||||| || ||| Sbjct 146671 GCCAAGCGCCATCGTAAGGTACTTCGTGACAACATCCAAGGAATCACGAAGCCCGCCATC 146730 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||| || |||||| |||| ||| | |||| || |||| | Sbjct 146731 CGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGTATCTCCGGACTCATCTACGAGGAGACT 146790 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 146791 CGTGGAGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAG 146850 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || ||||| ||| Sbjct 146851 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGTCAGGGC 146910 Query 16673 CG 16674 || Sbjct 146911 CG 146912 >seq171 Length=152934 Score = 167 bits (184), Expect = 4e-37 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || || |||||||||||||||||||| |||||||||||| |||| Sbjct 36251 AGGTATCACCAAGCCGGCCATTCGTCGTCTGGCTCGTCGTGGAGGAGTCAAGCGTATCTC 36310 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || || |||| || |||| ||| | || ||||| |||||||| ||| ||| |||| Sbjct 36311 CGGCCTGATCTACGAGGAGACTCGCGGAGTCCTGAAGGTCTTCCTCGAGAACGTCATCCG 36370 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||| || || ||| |||||||| || || |||||||||||| ||||||| |||| Sbjct 36371 TGACGCCGTCACCTACTGTGAGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGT 36430 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || | || ||||||| | ||||| || || Sbjct 36431 TTATGCTCTCAAGAGACAGGGCCGTACCCTCTATGGATTCGG 36472 >seq179 Length=92997 Score = 159 bits (176), Expect = 5e-35 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| ||||| || ||||| ||||| ||||||||||||||||| |||||| |||| Sbjct 67039 AGGAATCACGAAGCCCGCCATCCGCCGTCTCGCTCGTCGTGGTGGAGTGAAGCGTATCTC 66980 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| ||||| ||| | ||| |||||||| ||| |||||||| Sbjct 66979 CGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTCTTCCTCGAGAACGTTATCCG 66920 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||| || || ||| ||||||||| || | ||||| |||||| | ||||| ||||| Sbjct 66919 TGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACGGTCACCGCTATGGACATCGT 66860 Query 16651 CTA 16653 ||| Sbjct 66859 CTA 66857 >seq124 Length=1526711 Score = 136 bits (150), Expect = 6e-28 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || |||||||| |||||||| ||||| || |||||||| |||| Sbjct 1253748 AGGTATCACCAAGCCCGCCATCCGTCGCCTGGCTCGCCGTGGCGGTGTCAAGCGCATCTC 1253807 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| ||| | ||| | ||| ||||||| | | ||| |||| Sbjct 1253808 TGGGCTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTCTTCCTAGAAAACGTCATCCG 1253867 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| || ||| ||| ||||| || | ||||| |||||| ||||||| ||||| Sbjct 1253868 TGATGCCGTCACCTACTGCGAACACGCCAAGAGAAAGACCGTCACCGCCATGGACATCGT 1253927 Query 16651 CTA 16653 ||| Sbjct 1253928 CTA 1253930 >seq81 Length=934076 Score = 100 bits (110), Expect = 4e-17 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| |||||||| ||||| |||||| | || || |||||||| | || Sbjct 321323 AGGGATCACCAAGCCCGCTATCCGACGTCTCGCTCGTAGAGGCGGTGTCAAGCGCATTTC 321264 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| || |||| ||||| || ||||||| || ||| ||| | | |||| Sbjct 321263 CGGCCTCATCTACGAGGAGACTCGTGGAGTCCTGAAGATGTTTCTCGAGAACATCATCCG 321204 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAA 16620 ||| || || ||| |||||||| || || Sbjct 321203 TGACGCCGTCACCTACACCGAGCATGCCAA 321174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075025367363