Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq109 147 3e-30 seq126 95.1 2e-14 >seq109 Length=1818587 Score = 147 bits (162), Expect = 3e-30 Identities = 219/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||| || |||||||| || |||||| || ||||||||| |||||||||| |||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || || | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | | || ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||| | |||||||| || | ||| ||||| | | ||||||| || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | ||| | ||| || || || || || | | ||| ||||| | ||||| ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 63438 ATACCATTGGT 63448 | ||||| || Sbjct 200167 GTTCCATTTGT 200157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | ||| || | ||||||||||| || || || || | || | |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || || || || ||||| | ||| |||||||| || ||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCCTTG-TGAATTCCGACCGCGACTCTCATCAG 199795 Query 63731 CATGTGCTGAGGTCT---TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 ||| || || ||||| | ||| || ||||||| | |||| | |||||| || Sbjct 199794 CATCTGTTGGGGTCTCTCTGCAATGAGCTTGTTG---GTCTTCAGGAGGTAGGAGCGCTC 199738 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 | ||| || || || |||||| |||| || |||||||| ||||| | ||| | ||||| Sbjct 199737 GAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGTT 199678 Query 63848 GAGTTT 63853 ||||| Sbjct 199677 CAGTTT 199672 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 62275 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62334 |||| || || |||||||||| | |||| | | | | || ||||| || || | Sbjct 201414 TCTTCATGTCCTCATTCCATAGTCCGAGCTCGACAAGATCCTTGAGAAGATGTGGGTTTA 201355 Query 62335 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62394 | | ||| || ||||| |||| || | ||| |||| || || ||| || || || | Sbjct 201354 CAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAA 201295 Query 62395 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 ||||| || ||||| | |||||||||||| || ||||| |||||||| |||| || Sbjct 201294 TGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCA 201238 >seq126 Length=3090016 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 33345 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33404 |||||| || || || |||||||| || |||||||| || ||||| || |||| ||| Sbjct 2638360 TTCGTTCGATTGGGTCAGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGCAGC 2638301 Query 33405 GAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--- 33461 ||||| || || ||||||||||| || || ||||| |||||||| | || ||| | Sbjct 2638300 AAATGAGCCGGAGAAGAAGATTCCCTCGACAGCAGCGAAGGCAATCACTCGCTCGGCGAA 2638241 Query 33462 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 || | || ||| ||||| ||||||||||||||||||| || Sbjct 2638240 CGAAGCCTCGTCGTCGGCAATCCAGCGCAGAGCCCAATCGGCCTTCTTCTT 2638190 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || ||||| |||||||||||||| || ||||| || || || |||||||| | | |||| Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 |||| ||||| |||||| | | ||||| || | | || || || || ||||| ||| Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952 Query 33712 CTGGCTGCAAAAAACGCCAATACA 33735 ||| || || || ||||| ||| Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945712713560