Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq98 131 1e-25 seq161 100 2e-16 seq81 98.7 7e-16 seq95 86.0 4e-12 seq126 84.2 1e-11 >seq98 Length=2199593 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| Sbjct 1999163 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 1999104 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1999103 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1999069 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| Sbjct 2006008 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 2005949 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2005948 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2005914 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||| || Sbjct 2003956 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGCATTCCT 2003897 Query 20007 GGTAATATTTAGCCTT 20022 |||||||||| || Sbjct 2003896 TACAATATTTAGCTTT 2003881 >seq161 Length=883845 Score = 100 bits (110), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || | |||||| |||||||| || |||||||| | || || || || | Sbjct 96972 ACCCAACCAAGTTTTTCGGATGCGAACTCGGTGCTCAGACCAACTTCGACTCGAAGAATG 97031 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAA---GCTGCAGGACTTACTTGACG 6435 | |||| |||||||||||| || || |||||| || |||||||| || |||| Sbjct 97032 AACGCTACATCGTTAACGGTGAGC---ACGATGCCAATCGTCTACAGGACTTGCTCGACG 97088 Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 | |||||| |||||||| || |||| | |||||||| ||||||||| Sbjct 97089 GTTTTATTAAGAAGTTTGTACTCTGTCCTGCTTGCGATAATCCGGAGACC 97138 >seq81 Length=934076 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| ||| ||||| ||||| ||||| || |||||| || | || || Sbjct 595100 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCC 595041 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| ||||| || || || | || || || | ||| | || ||||||||| Sbjct 595040 AATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 594981 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||||| || || || ||| ||||| | || || || || Sbjct 594980 ATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCTTG 594921 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | |||||||||||| |||||||| Sbjct 594920 CCAGTGAGGGTTTTCACGAAGATCTGCAT 594892 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| || | ||| ||||| |||||| ||||| ||||| || |||||| || | Sbjct 596915 CGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCA 596856 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || |||||||| ||||| || || || | || || || | ||||| ||||||||| Sbjct 596855 TCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGGATTCCTTCTTTG 596796 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || |||||| |||| || || || ||| ||||| | || || Sbjct 596795 TCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGACTTCAAGAGTGATG 596736 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || | ||| || ||||| ||||||||| Sbjct 596735 GTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCATG 596700 >seq95 Length=527482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG-CGCATCTG 6229 |||||||| ||||| || | | ||| | |||||||||||||| |||||| || ||| Sbjct 498232 CTGAACGTTAATCGCAACATCACCGACCCCTTCTACCGCTACAAGATGCCGAAGCTGCTG 498173 Query 6230 CGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGT 6289 |||||||| || || || ||||| || || || || ||| | || |||||| | ||| | Sbjct 498172 -GCCAAGGTTGAAGGCAAAGGAAATGGCATCAAGACGGTCGTCGTGAACATGACGGAAAT 498114 Query 6290 CGCTAAGGCGCTCGGACGCCCTGCCA 6315 || ||| | || | || ||||||| Sbjct 498113 TGCCAAGTCCCTTGAGCGACCTGCCA 498088 >seq126 Length=3090016 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||||||||||||| |||||| || || ||||| || || | | ||| | Sbjct 1376312 ACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACC 1376253 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || |||| || || ||||| || || || || || || || | |||| |||||| || Sbjct 1376252 ATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 1376193 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || || || |||| || || || | || || || | || || Sbjct 1376192 GTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAGGGTGAT 1376133 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||||| || || ||||| || ||||| Sbjct 1376132 GGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946420305721