Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq109 143 3e-29 seq126 102 1e-16 >seq109 Length=1818587 Score = 143 bits (158), Expect = 3e-29 Identities = 219/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| || |||||||| || ||||| || ||||||||| |||||||||| |||| Sbjct 200467 TCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGAC 200408 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || || | | |||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 200407 CAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAG 200348 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | | || ||| || || |||||| | ||| | ||| | | Sbjct 200347 AGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAG 200288 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||| | |||||||| || | ||| ||||| | | ||||||| || || ||||||||| Sbjct 200287 ATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCC 200228 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | ||| || || || || || | | ||| ||||| | || || ||| Sbjct 200227 TGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGAT 200168 Query 63293 GTACCATTGGTC 63304 || ||||| ||| Sbjct 200167 GTTCCATTTGTC 200156 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||| || | ||||||||||| || || || || | || | |||||| Sbjct 199913 GTTCCAGAATTGAAAAGAGTAGGAGAAGCATGTGTGAAGAATCTCTCGCTCATCAGATTG 199854 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || || || || ||||| | ||| |||||||| || ||||| | ||| | Sbjct 199853 TAGGTTTCGATGGCGCTGTTGATATCTTCCTTG-TGAATTCCGACCGCGACTCTCATCAG 199795 Query 63586 CATGTGCTGAGGTCT---TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 ||| || || ||||| | ||| || ||||||| | |||| | |||||| || Sbjct 199794 CATCTGTTGGGGTCTCTCTGCAATGAGCTTGTTG---GTCTTCAGGAGGTAGGAGCGCTC 199738 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 | ||| || || || |||||| |||| || |||||||| ||||| | ||| | ||||| Sbjct 199737 GAGAGTCTTGAATCCGAAATAGGTGTAGGAGAAGTCTCGATCGTAGACTATAGCGGAGTT 199678 Query 63703 GAGTTT 63708 ||||| Sbjct 199677 CAGTTT 199672 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 62130 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62189 |||| || || |||||||||| | |||| | | | | || ||||| || || | Sbjct 201414 TCTTCATGTCCTCATTCCATAGTCCGAGCTCGACAAGATCCTTGAGAAGATGTGGGTTTA 201355 Query 62190 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62249 | | ||| || ||||| |||| || | ||| |||| || || ||| || || || | Sbjct 201354 CAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAA 201295 Query 62250 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 ||||| || ||||| | |||||||||||| || ||||| |||||||| |||| || Sbjct 201294 TGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCA 201238 >seq126 Length=3090016 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| |||||||||||||| || ||||| ||||| || ||||||||| | | |||| Sbjct 2638071 CTGTACATCTCCGAATGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGAAACGAGCC 2638012 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| ||||| |||||| | | ||||| || | | || || || || ||||| ||| Sbjct 2638011 TCGGATATCTGGACTTCTTTGGAGAATCGCTCGACAAGGTTCTCGTTGACGATTCCATCA 2637952 Query 33069 CTGGCTGCAAAAAACGCCAATACA 33092 ||| || || || ||||| ||| Sbjct 2637951 GAGGCGGCGAAGAAGGCCAAAACA 2637928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630487203600