Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq109 125 6e-24 seq126 116 3e-21 seq81 116 3e-21 >seq109 Length=1818587 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| | ||||| ||||||| ||| | ||| Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | |||||| || |||||||||| Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGCGATTACAAC 529711 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || || || Sbjct 529712 ATCCAGAAGGAATCTACTCTCCACTTGGTCCT 529743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 |||| || | || || || | |||||||||||||| | ||| || ||| | Sbjct 530061 CCATTACTCTAGAGGTCGAAGCTTCTGACACTATCGAAAATGTCAAGGCCAAGATCCAAG 530120 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| ||||| || || || || || ||||| | |||||||||||||| || | || | Sbjct 530121 ACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAGG 530180 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | | |||||| || |||| ||||| || ||||| || || || || || || || || Sbjct 530181 ACGGTCGCACATTGAGCGACTACAACATCCAAAAGGAGTCTACCCTCCACTTGGTCCT 530238 >seq126 Length=3090016 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| ||||||| || | || Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 1375616 GACACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 1375675 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| ||| ||| | || || || Sbjct 1375676 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAAC 1375735 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||| ||| || ||| | || || | || ||||||||| Sbjct 1375736 ATCCAGAAGGAAAGCACACTCCATCTCGTCCTTCGTCTGCGAGGAGGAA 1375784 >seq81 Length=934076 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | ||||| || | || Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||||||||| || || || ||||| Sbjct 596761 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 596820 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || |||||||||||||| || |||| |||||| || ||| ||||| Sbjct 596821 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 596880 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || ||| | || || | || | ||||||| Sbjct 596881 ATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGACTTCGTGGAGGAA 596929 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || || || ||||||| | ||||| || | || Sbjct 594891 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTC 594950 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| || ||| |||||||| || ||||| || ||||| Sbjct 594951 GGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 595010 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || |||||||||||||| || |||| |||||| || ||| ||||| Sbjct 595011 GCAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAA 595070 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || || || || Sbjct 595071 CATTCAGAAGGAATCCACCCTTCACTTGGTCCT 595103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || |||||||| | ||||| ||| | ||| Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| ||| ||| ||||| || || ||||| || || Sbjct 595180 GATACCATCGAGAACGTCA---AAGC-AAAGATCCAGGACAAGGAGGGAATTCCCCCAGA 595235 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || || ||||| || || | || |||| || || | || || Sbjct 595236 CCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTA 595295 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || ||||| || || ||||| || Sbjct 595296 CAATATCCAGAAGGAGTCCACCCTTCACTTAGTCCT 595331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326991293665