Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq81 122 7e-23 seq126 116 3e-21 seq109 116 3e-21 >seq81 Length=934076 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| |||||||| ||| || | Sbjct 594892 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTCG 594951 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||| ||||| ||||| || || || Sbjct 594952 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 595011 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||||||||| || |||||| |||||| | ||||| |||||| Sbjct 595012 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 595071 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | || || || | ||| | || || || Sbjct 595072 ATTCAGAAGGAATCCACCCTTCACTTGGTCCTCCGACTTCGTGGTGG 595118 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || |||| |||||||| || | | Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| ||| || || ||||||||||| ||||| || || || Sbjct 595180 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 595239 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || ||| | |||||| || ||| |||| || ||||| Sbjct 595240 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAAT 595299 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || ||||| | ||| | || || ||| Sbjct 595300 ATCCAGAAGGAGTCCACCCTTCACTTAGTCCTCCGACTTCGTGGTGGT 595347 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||||||||| ||| || | Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||| || || || || || || || Sbjct 596761 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 596820 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||||||||| || |||||| |||||| | ||||| |||||| Sbjct 596821 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 596880 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | ||| | ||| ||||| | || ||||| Sbjct 596881 ATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGACTTCGTGGAGG 596927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||||||||| || |||| ||||| || || | | Sbjct 594620 ATGCAAATCTTCGTCAAAACCCTAACCGGTAAGACCATCACCCTTGAGGTCGAGGCTTCT 594679 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| ||| || || ||||||||||| ||||| || ||||| Sbjct 594680 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 594739 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | ||||| || || || Sbjct 594740 CAGAGACTTATCTTCGCTGG 594759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 ||||||||||||| ||| || | || || | || || |||| || || || |||| Sbjct 595967 TCACTCTTGAAGTCGAAGCCTCGGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACA 596026 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 | ||||| || || || || || || | || || || || || || ||| | |||||| Sbjct 596027 AAGAGGGAATCCCCCCAGACCAGCAGAGACTCATCTTCGCTGGAAAGCAGCTCGAGGATG 596086 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 ||||||| | || || ||||| || || || || || || | ||| | ||| ||||| Sbjct 596087 GCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGAC 596146 Query 22436 TGCGCGGAGG 22445 | || ||||| Sbjct 596147 TTCGTGGAGG 596156 >seq126 Length=3090016 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || ||||| || |||| || || ||||| | || Sbjct 1376097 ATGCAAATTTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTCC 1376156 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || || || |||||||| || || || || || || Sbjct 1376157 GACACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1376216 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| ||| |||| ||| || || ||||||| |||||| Sbjct 1376217 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGTACTCTCTCCGACTACAAC 1376276 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| || |||| | || ||||| Sbjct 1376277 ATCCAGAAGGAGTCTACTCTTCATTTGGTCCTGCGTCTTCGTGGAGG 1376323 >seq109 Length=1818587 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22207 ACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 |||||| | ||||||||| || || |||||| | ||||| ||||| |||| || ||| Sbjct 529520 ACATTTTCAGCGATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAA 529579 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 || || | | || || | || || |||| || || ||||||||||| || || Sbjct 529580 GTCGAGGCTTCTGACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATC 529639 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || |||||||| || ||| | || ||||||||||| ||| | ||||| ||||| | Sbjct 529640 CCTCCCGATCAGCAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTG 529699 Query 22387 TCCGATTACAACATTCAAAAAGAATCCAC 22415 |||||||||||| || || ||||| || Sbjct 529700 AGCGATTACAACATCCAGAAGGAATCTAC 529728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||| || || ||||| |||||||| || | || || ||||||||||| Sbjct 530381 AAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAGCAGAGACTCATCTTTGCCGGCAAG 530440 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || ||| |||||||| ||||| || || || | ||| Sbjct 530441 CAGCTGGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCGACTCTCCAT 530500 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTT 22447 | || |||| | || ||||||| Sbjct 530501 CTCGTCCTGCGTCTTCGTGGAGGTT 530525 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || |||||||| || ||||| || ||||||||||| Sbjct 530111 AAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAG 530170 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||| | ||| |||||||| ||||| || || ||| | || Sbjct 530171 CAGCTCGAGGACGGTCGCACATTGAGCGACTACAACATCCAAAAGGAGTCTACCCTCCAC 530230 Query 22423 TTAGT 22427 || || Sbjct 530231 TTGGT 530235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727022951915