Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq99 102 2e-16 seq181 100 6e-16 seq126 100 6e-16 seq115 100 6e-16 seq70 100 6e-16 seq114 87.8 4e-12 >seq99 Length=2334346 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||| Sbjct 2059706 TAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 2059647 Query 142562 GCCCCACATCGGGC 142575 ||||| |||||||| Sbjct 2059646 GCCCCGCATCGGGC 2059633 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 2055896 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2055837 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 2055836 CCCCGCATCGGGC 2055824 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 2061532 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2061591 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 2061592 CCCCGCATCGGGC 2061604 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 1963176 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1963235 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1963236 CCCGCATCGGGC 1963247 >seq181 Length=1162931 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 268793 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 268852 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 268853 CCCCGCATCGGGC 268865 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 372540 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 372599 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 372600 CCCCGCATCGGGC 372612 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 408715 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 408656 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 408655 CCCCGCATCGGGC 408643 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 441033 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 440974 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 440973 CCCCGCATCGGGC 440961 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 406804 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 406745 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 406744 CCCCGCATTGGGC 406732 >seq126 Length=3090016 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 476471 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 476530 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 476531 CCCCGCATCGGGC 476543 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 493709 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 493650 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 493649 CCCCGCATCGGGC 493637 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 873333 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 873274 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 873273 CCCCGCATCGGGC 873261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 437315 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 437374 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 437375 CCCGCATCGGGC 437386 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 251530 ACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGA 251589 || || ||||||||||| || || || ||||| || || | ||| || || | Sbjct 2638820 ACTCCGGGACGTTGATACTCGGAGACTTTTTTCTCGAAAAAGTTCGTCTTTCCGTCGATG 2638761 Query 251590 GAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGT 251649 ||||| |||||||||||||||||||| |||| ||||| ||||| | |||||| Sbjct 2638760 GAGATGTTTTCCATGAAGTCGAAGGGGTTCTTGGCGTTGTAGAGCTTGTCACAGCCAAGC 2638701 Query 251650 GCTAC--GAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCA 251707 | || |||||| |||| || || || || | |||||| |||| || | |||||| Sbjct 2638700 TCGACGAGAAGAT--GGTCCGCGACGAATTCAATATACTGCGCCATAAGACGACAGTTCA 2638643 Query 251708 TGCCAATCAT 251717 | || ||||| Sbjct 2638642 TTCCGATCAT 2638633 >seq115 Length=1067547 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 747037 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 746978 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 746977 CCCCGCATCGGGC 746965 >seq70 Length=350231 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 244880 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 244821 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 244820 CCCCGCATCGGGC 244808 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 327799 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 327858 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 327859 CCCCGCATCGGGC 327871 >seq114 Length=4597891 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 ||||| ||||| ||| || | | ||||| ||||| ||||| ||||||||||| || Sbjct 4248097 GCTGGAACCAAGAACGCTCATTTGTGCACACTCATTCTGACCGAGGGAGACTCTGCCAAA 4248038 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 ||| |||| | |||| | || || || || || || | ||||| ||||||| ||| Sbjct 4248037 ACGTTGGCTGTCTCTGGATTGGCTGTAGTCGGACGAGACCGATATGGAGTCTTCCCACTC 4247978 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958 || || ||||||||||| || || || Sbjct 4247977 CGAGGAAAGCTGCTCAATGTCCGAGA 4247952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834284690631