Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq126 150 3e-31 seq109 141 2e-28 >seq126 Length=3090016 Score = 150 bits (166), Expect = 3e-31 Identities = 293/439 (67%), Gaps = 49/439 (11%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||||||||||||||||||||| || || ||||| |||||||| | | | ||| | Sbjct 2637933 TGGCCTTCTTCGCCGCCTCTGATGGAATCGTCAACGAGAACCTTGTCGAGCGATTCTCCA 2637992 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| || ||| | ||||| || | ||||||||||||||| || ||||| |||||| Sbjct 2637993 AAGAAGTCCAGATATCCGAGGCTCGTTTCTTCTACGGCTTCCAAATCGCCATCGAGAACA 2638052 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG---- 42599 | || || ||| ||||| ||| || || | || || |||| ||||| |||||| Sbjct 2638053 TTCATTCGGAGATGTACAGCAAGCTAATCGAAACCTATATCCGCGATCCTGTCGAGAGGT 2638112 Query 42600 -----------------------------------CGTAACGGGCTGTTCAAGGCCATGG 42624 | ||| | || ||||| ||||| Sbjct 2638113 TTGATTTCGCCTTATCTTACCTCAACTCATCATTCAGGAACCGTCTCTTCAACGCCATCT 2638172 Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT---CGA-GAGT 42680 | | |||||||||||||||||||| || ||||| || |||||| ||| || Sbjct 2638173 TCGAGTTTCCCTGCATCAAGAAGAAGGCCGATTGGGCTCTGCGCTGGATTGCCGACGA-- 2638230 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 ||| || |||||| |||| | || | ||||| | || |||||||| ||||||||| Sbjct 2638231 --CGAGGCTTCGTTCGCCGAGCGAGTGATTGCCTTCGCTGCTGTCGAGGGAATCTTCTTC 2638288 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCAC 42799 || ||| | || || ||||||||||||| ||| || ||| | |||||||| || || Sbjct 2638289 TCCGGCTCATTTGCTGCCATCTTCTGGCTGAAGAAGCGTGGTCT-TATGCCCGGCCTGAC 2638347 Query 42800 CTTCTCGAACGAACTCATC 42818 | ||||||||| | ||| Sbjct 2638348 CCAATCGAACGAATTGATC 2638366 >seq109 Length=1818587 Score = 141 bits (156), Expect = 2e-28 Identities = 393/599 (66%), Gaps = 23/599 (4%) Strand=Plus/Minus Query 243996 CGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACA 244055 |||| || || || ||||| |||| | ||| |||| | ||||| || ||||| | Sbjct 201453 CGATTTTTTGAACAGAGCCATTGTTGGAGATCAGCTCCATCTTCATGTCCTCATTCCATA 201394 Query 244056 GGCCCAAGCGCTCCA-GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 | || | || | || | ||| || || || ||| || | || || ||||||||| Sbjct 201393 GTCCGA-GCTCGACAAGATCCTTGAGAAGATGTGGGTTTACAATTTGGAAGTCTCCCGAC 201335 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 ||||| || || ||| | ||| | || ||||| ||| ||| |||| || || Sbjct 201334 AGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAATGGACTCGTTGTTTCCAAGA 201275 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC 244234 || || || || ||||| ||||| || | || |||||||||||| | | || | | Sbjct 201274 ATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCAGCAGACTGTTACGGATTCCATTC 201215 Query 244235 CTCTGGAT------GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 ||| ||| ||| || ||||| ||||| || ||| ||| || Sbjct 201214 TTCTTGATCTTCTCGCGAAGAGTGAGC------CAGTCGCATTGGCC----AGG----CG 201169 Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348 || | | |||||||| || || ||||| | || ||| ||| || ||||||||||| Sbjct 201168 -GTGTAACTCCCCACATATCGAATTGCAGGATTCCTTTGGAGACCGGACTGCCCTCGTAC 201110 Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 ||| |||||||||| ||| |||||| | ||| | || || || ||| ||| Sbjct 201109 GTCTCGTAGGGACCGAGTTGCTCGGCCAGTTCACAAGATGCCTCCAGAGCTCCGTGATAG 201050 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 || ||||||||||| |||||||| || ||||| | | | ||||| | || | Sbjct 201049 ATCGTCTCGAAGATTCGCTTGTTCAAATCTCGGGCTTCGGGAGAATTGAAGTTGTAGCGC 200990 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 |||| |||||| | ||||| || ||||| || || | |||||||| | || || || Sbjct 200989 ATCAACATGAAAGCATCGGCAAGGCCCTGTACTCCCAGTCCGATGGGACGATGACGTATG 200930 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 || || |||||| || || || ||| | || |||||| | |||||| || || Sbjct 200929 TTTGAATTACGGGCTTCCGGAACCGGATAATAATTAATGTCGATGATCTTGTTCAGATT 200871 Score = 109 bits (120), Expect = 1e-18 Identities = 339/529 (64%), Gaps = 47/529 (9%) Strand=Plus/Minus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| ||||| ||||| || | ||| || | | |||| |||||||||||| ||||| Sbjct 200744 GGCGAGGTTACAGACAGCAATCTCATCTGGAGCCGAATACTCGACAATCTCGGTACAGAG 200685 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT- 244805 ||| |||||||||||| ||||| | ||| || ||||||||| || ||||| |||| Sbjct 200684 ATTAGAGCACTTGATGGTTCCCAGATTCTGCTGGTTGGACTTGCGATTACAGGCATCCTG 200625 Query 244806 --------------------------------------TGTAGAGCATGAAGGGCCCCCC 244827 |||| | ||| | || || Sbjct 200624 TACAGCCAATTACATCGGCAGAAAAACAAAAAATACCTTGTATACAATGTACGGAAGTCC 200565 Query 244828 GGTCTCGAGCTGGG-CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGC 244886 ||||||| ||||| ||| | ||| | |||||| | | ||||||||| | | | Sbjct 200564 AGTCTCGATCTGGGACGAA-ACCACGTGCTCCCAGAGCTTACGCGCCTTGACCTGCTTAC 200506 Query 244887 G--AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGAC 244944 | ||| | || || | |||||| ||||| || |||||| || |||||| Sbjct 200505 GGAAGCGT--CCTTCGGACTCGTACTTAGTGTAAAGCTTCTCGAATTCTTCTCCCCAGCA 200448 Query 244945 CTCGTCTAGGCCGGGGCACG-ACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGA 245003 ||||| | ||||| || ||| || ||||| || ||| ||| | | | || Sbjct 200447 ATCGTCCAAACCGGGACATTCACGA-GGACACATCAGCGACCAGTCGGTATCTTGTTCGA 200389 Query 245004 CCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT 245063 | |||| |||||| || || |||||||| || ||| | ||||| || | | | || || Sbjct 200388 CTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAGAGATCACGAGCACGCTCCT 200329 Query 245064 CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCT 245123 | || | ||||||||||| ||||| | || ||||||| || ||||||| |||| Sbjct 200328 CTTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAGATATCTGCGTGCCACGGCT 200269 Query 245124 CCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 | | ||||| |||| || || || ||||| || ||||||||||| || Sbjct 200268 CGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCCTGGTCGAC 200220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336945390160