Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq109 179 9e-40 seq126 150 4e-31 seq81 129 1e-24 seq76 104 6e-17 >seq109 Length=1818587 Score = 179 bits (198), Expect = 9e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| || |||||||| | ||| ||| ||||||||||| ||||||| Sbjct 529986 CCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGAC 529927 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| | ||| ||||| || || || ||||||||||||||||| || ||| || Sbjct 529926 AGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGA 529867 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || ||||| |||||||| |||| ||| | ||| ||| Sbjct 529866 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACT 529807 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || || ||||| |||||||| Sbjct 529806 TCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | || ||| || ||||| || || | Sbjct 529762 CATG-CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAAT 529704 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || ||||| ||||| || | || || || || || |||| |||||| ||| Sbjct 529703 CGCTCAGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGG 529644 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||| || || ||||| || || || || ||||| |||| || | | Sbjct 529643 GAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCT 529584 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| ||||| || || ||||| ||||| |||||||| || ||||| Sbjct 529583 CGACTTCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 529532 >seq126 Length=3090016 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| |||||||| | |||||||| || ||||| |||||||| | Sbjct 1375783 TCCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGA 1375724 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || ||||| | || || || |||||||| |||||||| || || Sbjct 1375723 GAGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 1375664 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| || || || ||||| || || | || | ||| || Sbjct 1375663 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGAC 1375604 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| || || || |||| |||||||||||| |||||||| Sbjct 1375603 TTCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || || || ||||||| || || || |||||| Sbjct 1376287 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAG 1376228 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| ||||| || |||||||| || ||||| ||||| Sbjct 1376227 ATAAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTC 1376168 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||| ||||| || ||||||||||||||| Sbjct 1376167 TCGATCGTGTCGGAAGCCTCCACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACG 1376108 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1376107 AAAATTTGCATT 1376096 Score = 102 bits (112), Expect = 2e-16 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 269149 ATGATCGGTATGAA-TGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT 269207 |||||||| ||||| || || ||| ||| || ||||| |||||||| || || | || Sbjct 2638633 ATGATCGGAATGAACTGTCG-TCTTATGGCGCAGTATATTGAATTCGTCGCGGACC--AT 2638689 Query 269208 CTTCACGGCA--CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATG 269265 |||| || | || || | ||| || | ||||| | ||||| ||||||| ||| ||| Sbjct 2638690 CTTCTCGTCGAGCTTGGCTGTGACAAGCTCTACAACGCCAAGAACCCCTTCGACTTCATG 2638749 Query 269266 GAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 ||| || || |||| |||||||||||||| ||||| || ||| ||| |||||| Sbjct 2638750 GAAAACATCTCCATCGACGGAAAGACGAACTTTTTCGAGAAAAAAGTCTCCGAGTATCAA 2638809 Query 269326 CGTCCTGGTGT 269336 ||||| || || Sbjct 2638810 CGTCCCGGAGT 2638820 >seq81 Length=934076 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || ||||| | || || || || || || ||||||| Sbjct 596928 TCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 596869 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || |||||||| || |||||||| || | ||| || ||||| Sbjct 596868 CAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGG---TCTGG 596812 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||||||||| |||||||| || || |||||||| || || | || | ||| Sbjct 596811 GGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTC 596752 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 596751 GACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || | |||| ||| || || |||||||| ||||| | | Sbjct 595346 CCACCACGAAGTCGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAG 595287 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || ||||| |||||||||| | || || |||||| Sbjct 595286 AGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGG---TCTGGG 595230 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || ||||| ||||| || || | ||| | || Sbjct 595229 GGAATTCCCTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCG 595170 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 595169 ACTTCAAGTGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 102 bits (112), Expect = 2e-16 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | | || ||||| ||||| || || ||||| |||||| Sbjct 596390 TCCTTCTGGATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAACTGCTTTCCGGCGAAG 596331 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | |||||| |||||| |||||||| ||||||||||| || || |||||| Sbjct 596330 ATGAGTCTTTGTTGA---TCTGGGGGAATTCCTTCCTTATCCTGGATCTTAGCCTTCACG 596274 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 || || |||| ||| | || || ||||| ||||| |||| Sbjct 596273 TTCTCAATAGTGTCGGAAGCCTCAACCTCGAGTGTGATGGTCT 596231 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || | |||| ||| || || |||||||| ||||| | | Sbjct 595886 CCACCACGAAGTCGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAG 595827 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || ||||| |||||||||| | || || |||||| Sbjct 595826 AGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGG---TCTGGG 595770 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || |||||||| || |||| ||| | || Sbjct 595769 GGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCAATAGTGTCGGAAGCCTCA 595710 Query 288424 ACTTCGAGCGTGATCGTCT 288442 || ||||| ||||| |||| Sbjct 595709 ACCTCGAGAGTGATAGTCT 595691 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || ||||| | || || || |||||||| ||||| | Sbjct 595617 TCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGA 595558 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || | || ||||| |||||||| || | || ||| ||||| Sbjct 595557 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTTTGCTGA---TCTGG 595501 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| ||||||||||| || || |||||||| || || | || | || Sbjct 595500 GGGAATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATTGTGTCCGAGGCCTC 595441 Query 288423 TACTTCGAGCGTGATCGTCT 288442 || ||||| ||||| |||| Sbjct 595440 AACCTCGAGAGTGATAGTCT 595421 >seq76 Length=529262 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| |||||| || | || ||||| || ||||||||||| || || Sbjct 255869 CCGGCGAAGATCAAACGCTGCTGGTCAGGGGGAATTCCCTCCTTATCCTGGATCTTGGCC 255928 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || || ||||| ||||| ||||| ||||||||| Sbjct 255929 TTCACATTCTCAATGGTATCAGAGGCCTCGACCTCGAGGGTGATAGTCTTACCGGTCAGA 255988 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 255989 GTCTTCACGAAGATCTGCAT 256008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651513164498