Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq126 122 9e-23 seq109 122 9e-23 seq81 111 2e-19 >seq126 Length=3090016 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || ||||| | || ||| || || ||||| || || | | Sbjct 1375782 CCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAG 1375723 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| |||||||||||||| | ||||| ||||||||||| |||||| Sbjct 1375722 AGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1375663 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || ||| ||| || ||| | || || || || ||| Sbjct 1375662 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACT 1375603 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| ||||| |||||||| || ||||| || ||||| Sbjct 1375602 TCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || || |||||||| || | || || || | ||| Sbjct 1376308 AGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 1376249 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || ||||||||||| || || || ||||| || || Sbjct 1376248 TCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1376189 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || || || ||||| || | || | ||| Sbjct 1376188 TGGA-TCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAGGGTGATGGT 1376130 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||| ||| || ||||||||||||||| Sbjct 1376129 CTTACCCGTCAGAGTCTTGACGAAAATTTGCATT 1376096 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| |||||||||||||| | ||||| |||||||| || || ||||||||||| || Sbjct 1375436 TCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATTCCTTCCTTG 1375377 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || || | ||||| || || || || | ||| | | Sbjct 1375376 TCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTCGAGAGTGATG 1375317 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| | |||||| ||||| |||||||| Sbjct 1375316 GTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 1375282 >seq109 Length=1818587 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | ||||| |||| || |||||||||||| Sbjct 529728 GTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCCTCGAGCTGCTTGCCG 529669 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | |||||||| |||||||| |||||||| || ||||| || || ||| Sbjct 529668 GCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 529609 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| || || ||||| | || | || || ||||| | |||| Sbjct 529608 ACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTTTTCCGGTGAGAGTT 529549 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 529548 TTGACGAAGATTTGCAT 529532 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || ||||| |||||||| || || |||||| | || Sbjct 530508 AGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 530449 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| | |||||| ||||||||||| |||||||| || Sbjct 530448 TCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 530389 Query 64352 TGTATTTT 64359 || || || Sbjct 530388 TGGATCTT 530381 Score = 102 bits (112), Expect = 8e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | ||||| |||| || |||||||||||| Sbjct 530223 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAATGTGCGACCGTCCTCGAGCTGCTTGCCG 530164 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| |||||||| |||||||| || ||||| || || ||| Sbjct 530163 GCAAAAATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 530104 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 ||| || | || ||| || || || |||| ||| | ||||| Sbjct 530103 ACATTTTCGATAGTGTCAGAAGCTTCGACCTCTAGAGTAATGGTCT 530058 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || || || ||||| | ||| ||||| ||||| || ||||| || | Sbjct 529987 ACCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGA 529928 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| | ||||||||| || | || || || ||||| |||||||| Sbjct 529927 CAGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGG 529868 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||| || || || | | || ||||| || || | || || ||| || | Sbjct 529867 AATTCCTTCCTTGTCCTGGA-TCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGA 529809 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 529808 CTTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 >seq81 Length=934076 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || ||||||||||| || | | ||||| | || || | || Sbjct 595094 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCCAATTGT 595035 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | ||||| | ||||||||| || |||||||| ||||| || || || || Sbjct 595034 TTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTG 594975 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||| || ||| || ||||| | || | ||||||||| || Sbjct 594974 GCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTG 594915 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||||| ||||| || |||||| Sbjct 594914 AGGGTTTTCACGAAGATCTGCATT 594891 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || ||||||||||| || | | ||||| | || Sbjct 596912 AGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCC 596853 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || |||||||| | ||||| | ||||||||| || || ||||||||||| || Sbjct 596852 TCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCC 596793 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||| || ||| || ||||| | ||| | |||| Sbjct 596792 TGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGACTTCAAGAGTGATGGTC 596733 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| || ||||| Sbjct 596732 TTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643607098040