Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq126 111 1e-19 seq109 107 1e-18 >seq126 Length=3090016 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| || || || |||||||| ||| |||| | | | |||||| Sbjct 1376305 ACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCT 1376246 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | || | |||||| ||||| || || ||||||||||| Sbjct 1376245 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1376186 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| || | || || || ||| | || || || | ||| ||||| ||| Sbjct 1376185 ATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAGGGTGATGGTCTTA 1376126 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || ||||||||||| Sbjct 1376125 CCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 |||| |||| | ||||| | || ||||| ||| | || | |||||| || || || Sbjct 1375449 GAGAGTTCTGCCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGG 1375390 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||||| || ||| || || |||| || |||||| | ||| || Sbjct 1375389 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGAC 1375330 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || | || ||||| || || || |||||||| || || |||||||| ||||| Sbjct 1375329 CTCGAGAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCTGAAA 1375274 >seq109 Length=1818587 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || || || |||||||||||||| || | | |||| || Sbjct 529740 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCCTCG 529681 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||||||||| || ||| || |||||||||||||| Sbjct 529680 AGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 529621 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| |||| ||||| || | || || || | ||| || ||||| Sbjct 529620 ATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTTTT 529561 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || |||||||| || || |||||||| ||||| Sbjct 529560 CCGGTGAGAGTTTTGACGAAGATTTGCATCGCTGAAA 529524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| || ||||| ||| || |||| | ||||| || || Sbjct 529963 ATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTTCTTCCATCTTCCAACTG 529904 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | |||| ||| || || ||| ||||||||||||||||| || || Sbjct 529903 CTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 529844 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || |||| ||||| ||| ||| || || | ||||| || || || || Sbjct 529843 AGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTAATCGTCTTCCCAGT 529784 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 529783 GAGCGTTTTCACGAAGATCTGCAT 529760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || ||||| |||||||| ||||| | | | |||| || Sbjct 530235 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTCAATGTGCGACCGTCCTCG 530176 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | |||| |||||| || ||| || |||||||||||||| Sbjct 530175 AGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 530116 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||| || ||| |||| ||||| || | ||| || |||| |||||||| Sbjct 530115 ATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCTTCGACCTCTAGAGTAATGGT 530060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391168058435