Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq109 141 9e-29 seq81 104 2e-17 seq126 91.5 1e-13 >seq109 Length=1818587 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || || || |||||||||| | Sbjct 529758 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTC 529699 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | ||||| ||||||||||||||||| Sbjct 529698 AGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGG 529639 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || ||||| | ||||| ||||| | | ||||||| Sbjct 529638 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACT 529579 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| ||| | ||||| ||||| |||||||| || || || ||||| ||| Sbjct 529578 TCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 529528 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||||| || | ||| | |||||| || ||||| |||||||| ||| | Sbjct 529986 CCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGAC 529927 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| || | ||| || || ||| |||||| || |||||||||||||| Sbjct 529926 AGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGA 529867 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || |||| | ||| | ||||| | |||||| Sbjct 529866 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACT 529807 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| || || || || ||||| || || ||||||||| Sbjct 529806 TCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCATG 529759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| ||||| || ||||| |||| | |||||| | Sbjct 530511 CGCAGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCA 530452 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | || ||||||||||||||| ||||| || ||| Sbjct 530451 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGAATGCCTTCTTTG 530392 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 ||| ||| || ||||| | ||| | |||||||| | ||||| || | ||| Sbjct 530391 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACCTCCAGGGT 530336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| ||||| || ||||| |||| | Sbjct 530253 CCACCACGGAGACGAAGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTC 530194 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | |||| ||||||||||||||||| Sbjct 530193 AATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGGG 530134 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 || || |||||||| ||| || ||||| | ||||| ||||| Sbjct 530133 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTC 530087 >seq81 Length=934076 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || || || | || ||||| || || |||||||| || Sbjct 595346 CCACCACGAAGTCGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAG 595287 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||| ||| ||||||||| ||||| || || || Sbjct 595286 AGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGA 595227 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| |||| | |||| ||| || | | |||||| Sbjct 595226 ATTCCCTCCTTGTCCTGGATCTT-TGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGAC 595168 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | || || || |||| ||| || || || ||||||||| Sbjct 595167 TTCAAGTGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCATG 595119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | || ||||||||| ||||| || |||||||||||| ||| || ||| Sbjct 594759 CCAGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTT-TGC 594701 Query 127034 -TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| | |||| ||| || | | |||||| || | ||| | || || ||||| || Sbjct 594700 TTTGACGTTCTCGATGGTATCAGAAGCCTCGACCTCAAGGGTGATGGTCTTACCGGTTAG 594641 Query 127093 AGTTTTTACAAAAATCTGCATGGCT 127117 ||||| || || || ||||| ||| Sbjct 594640 GGTTTTGACGAAGATTTGCATAGCT 594616 >seq126 Length=3090016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| |||| | ||||||||||| || || || || ||||| Sbjct 1375437 ATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATTCCTTCCTT 1375378 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | ||||| ||| || | | ||||| |||| || | Sbjct 1375377 GTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTCGAGAGTGAT 1375318 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || ||||| |||||||| || || || ||||| ||| Sbjct 1375317 GGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCATCGCT 1375278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 |||| || ||||| ||||| |||| || ||||| |||| | | |||| | ||| Sbjct 2638664 AGTATATTGAATTCGTCGCGGACCATCTTCTCGTCGAGCTTGGCTGTGACAAGCTCTACA 2638723 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 || || |||| || ||||| || ||| | ||||| || |||| || ||||| ||||||| Sbjct 2638724 ACGCCAAGAACCCCTTCGACTTCATGGAAAACATCTCCATCGACGGAAAGACGAACTTTT 2638783 Query 47557 TCGAGAAGCGCGTCGGCGAATATAAACGT 47585 ||||||| ||| ||| ||| ||||| Sbjct 2638784 TCGAGAAAAAAGTCTCCGAGTATCAACGT 2638812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499664741840