Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq109 145 7e-30 seq126 102 7e-17 >seq109 Length=1818587 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | || || ||||| ||||| ||||||||||||||||| || ||| Sbjct 529989 ATACCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCG 529930 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || |||||| | |||| |||||||| || || Sbjct 529929 GACAGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGA 529870 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || ||||| ||| | |||||||| | ||| Sbjct 529869 GGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCG 529810 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| ||| || || || || ||||| || || || ||||| Sbjct 529809 ACTTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || |||||||| | || | || || | || Sbjct 529734 TGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCCTCGAGCTGC 529675 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || ||||| || || || || ||||| || ||||| || || Sbjct 529674 TTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTG 529615 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| |||| |||||||||||| || | ||||| ||||| Sbjct 529614 GCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTTTTCCGGTG 529555 Query 45318 AGAGTTTTTACAAAAATTTGCATCGC 45343 |||||||| || || ||||||||||| Sbjct 529554 AGAGTTTTGACGAAGATTTGCATCGC 529529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || || ||||| || || || ||||||||||| || || |||||| Sbjct 530523 CCTCCACGAAGACGCAGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTG 530464 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || || | || | || ||||| || || ||| Sbjct 530463 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGA 530404 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| || || || || |||| ||| | |||||| |||| ||||| Sbjct 530403 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACC 530344 Query 45294 TCGAGAGT 45301 || || || Sbjct 530343 TCCAGGGT 530336 >seq126 Length=3090016 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| || || | || || | ||| || || || ||||| ||||| || || ||| Sbjct 1376325 TTCCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 1376266 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | ||| || | || || || ||| | || | || |||||||| |||| Sbjct 1376265 AGAGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCG 1376206 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | |||||||| || || || || || ||||| || | || | |||||||||| ||| Sbjct 1376205 GGATGCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGTTCTCGATCGTGTCGGAAGCCTCC 1376147 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || ||||| || || ||||||||||| Sbjct 1376146 ACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | || ||||| || || |||||| ||||| ||||| || Sbjct 1375785 ATTCCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCA 1375726 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | || || || ||| | || | || ||||||||||| Sbjct 1375725 GAGAGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGA 1375666 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || ||| |||| || | || | ||||| |||| || Sbjct 1375665 GGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTCTCAATCGTGTCCGAAGCTTC 1375607 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | |||||||| || | ||| || || || || ||||| Sbjct 1375606 GACTTCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || ||||| ||||| ||||| ||||| || || || || Sbjct 1375427 TGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATC 1375368 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| ||| | ||| ||||||| ||||| |||||||| | || || ||| Sbjct 1375367 TTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCG 1375308 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || |||||||| || || ||||||||||| Sbjct 1375307 GTGAGAGTTTTGACGAAGATTTGCATCGC 1375279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002120842360