Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq126 147 2e-30 seq109 105 8e-18 seq81 104 3e-17 >seq126 Length=3090016 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||| | | ||||| |||| ||| | ||| |||||| ||||| ||||||||| Sbjct 1376326 TTTCCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 1376267 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || ||||| || | || || ||||||||||||||||| || | ||||||||||| | | Sbjct 1376266 GAGAGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGC 1376207 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| |||||| |||| || | | ||||||| | ||| Sbjct 1376206 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCC 1376147 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | |||||||| || |||||||| || || || || ||||||||| Sbjct 1376146 ACCTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCATT 1376096 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | || ||||| | ||| || ||||| ||||| || ||||| || Sbjct 1375782 CCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAG 1375723 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || |||||||||||||||||||| || | ||||||||||| | || Sbjct 1375722 AGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1375663 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| || | | |||||| | ||| || Sbjct 1375662 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACT 1375603 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||||||||||| || || || ||||| ||||| Sbjct 1375602 TCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| || | |||||||| || | || | | |||||| Sbjct 1375436 TCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATTCCTTCCTTG 1375377 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | || ||| | ||| || || | |||||| Sbjct 1375376 TCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTCGAGAGTGATG 1375317 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| || ||||||||||| Sbjct 1375316 GTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 1375282 >seq109 Length=1818587 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| ||| || ||||| |||| ||||||||||||||||| || Sbjct 529722 TCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAA 529663 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| |||| || | | |||||||| |||||| ||||| | Sbjct 529662 ATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTT 529603 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | ||||| ||||| || || || ||||| || Sbjct 529602 TCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTTTTTCCGGTGAGAGTTTTGACG 529543 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 529542 AAGATTTGCAT 529532 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | ||| ||||||||||||||||||||||| || || | | Sbjct 529974 CGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTTCTTCCA 529915 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||||||||| ||||| |||| || ||||| |||| || | | |||||| Sbjct 529914 TCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTTCCTTG 529855 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||| | | | |||||| | ||| || || | || || Sbjct 529854 TCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTAATC 529795 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || |||||||| || ||||| ||||| Sbjct 529794 GTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| | ||||| |||| ||||||||||||||||| || Sbjct 530218 CTCCTTTTGGATGTTGTAGTCGCTCAATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAA 530159 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||| |||| || | | |||||||| |||||| ||||| Sbjct 530158 AATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGA 530103 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 46358 TATTATTTG---CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATA 46414 ||||| ||| ||||| | | ||||| || ||||| | || |||||||||||| Sbjct 530535 TATTAGTTGGAACCTCCACGAAGACGCAGGACGAGATGGAGAGTCGACTCCTTTTGGATG 530476 Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 ||||||||| || ||||| | || || |||||||||||||| || || | | |||| Sbjct 530475 TTGTAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGC 530416 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || |||| || | || || |||||| |||||| ||||| Sbjct 530415 TGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGA 530373 >seq81 Length=934076 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || | || ||||||||||| |||||||| Sbjct 595311 CTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAA 595252 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | |||||||||| |||||| |||| | Sbjct 595251 GATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTTGCTTTGACGTT 595192 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | || || || | |||||||| || ||||||| || || || Sbjct 595191 CTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTTCCCGTCAAAGTCTTGAC 595132 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 595131 GAAGATCTGCAT 595120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| | |||||| | || || | || ||||||||||| Sbjct 595082 TCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAG 595023 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | ||| |||||| |||||| ||||| || Sbjct 595022 ATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTC 594963 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | |||||||| ||||| || || ||||| || Sbjct 594962 TCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACG 594903 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 594902 AAGATCTGCATT 594891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || | || ||||||||||| |||||||| Sbjct 595851 CTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAA 595792 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||||| | |||||||| | || | | |||||| ||| |||||| Sbjct 595791 GATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTT 595744 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | ||| |||||| |||||||||||||| || | ||||| | Sbjct 596144 CGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCA 596085 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| || | | ||||||||| | || | | ||| ||| Sbjct 596084 TCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTG 596025 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| | ||| || || | |||||| Sbjct 596024 TCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGAGTGATG 595965 Query 46559 GT 46560 || Sbjct 595964 GT 595963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | ||| |||||| || || ||||||||||| | |||||| | Sbjct 596915 CGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCA 596856 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | || ||||||||||| || | | ||||||||| | || | | || ||| Sbjct 596855 TCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGGATTCCTTCTTTG 596796 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| | ||| || || | |||||| Sbjct 596795 TCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGACTTCAAGAGTGATG 596736 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| ||||| Sbjct 596735 GTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237050493320