Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq77 140 1e-27 seq118 134 5e-26 seq109 120 1e-21 seq84 104 9e-17 seq126 91.5 6e-13 seq81 89.7 2e-12 >seq77 Length=809317 Score = 140 bits (154), Expect = 1e-27 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | || ||||| || | || |||||| |||| ||||| ||||| ||||||| Sbjct 298662 TTCAAGTCGAATACAAAGGAGAGAGCAAGACTTTTACTCCGGAAGAGATTTCTTCTATGG 298603 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 |||| |||||||| ||||| || ||||| | | ||| | || | || || | Sbjct 298602 TTCTGGTCAAAATGAAGGAAACTGCTGAACAGTTCCTCGGTCAGACGGTCAAGGACGCCG 298543 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | || || || ||||||||||| || | ||||| || ||||| ||||| || ||| Sbjct 298542 TTGTCACCGTGCCAGCTTATTTCAACGACTCTCAACGTCAGGCAACCAAAGACGCCGGAG 298483 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 |||||||| | ||||||||||| || || || || || || || |||||| | || | Sbjct 298482 CCATTGCTGGACTCAATGTTCTTCGTATCATCAACGAGCCGACTGCTGCTGCTATTGCCT 298423 Query 451446 ATGGACT 451452 | ||||| Sbjct 298422 ACGGACT 298416 Score = 96.9 bits (106), Expect = 1e-14 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 452351 GGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATT 452410 |||||||| ||||| ||| | || ||||| ||||||| || | ||||| || || Sbjct 297335 GGTATTCTCAATGTACATGCTGCGGACAAATCGACTGGAAAGTCGAACAAAATCACCATC 297276 Query 452411 ACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470 || ||||| ||| ||| | || ||||| || |||||||||||||| |||| || ||| Sbjct 297275 ACCAATGACAAAGGACGTCTGTCCAAAGAGGAGATTGAAAAAATGGTCAATGATGCGGAA 297216 Query 452471 AAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGAA 452530 || |||| |||||||||| | | | | | || ||||||| |||| || || Sbjct 297215 CGATATAAGGCTGATGATGAAGCTGCGAAAGAGAAGATTCAAGCTAAGAACAGCCTCGAG 297156 Query 452531 GGATATTGTTATCAA-ATGAAACAAAC 452556 | || || | |||| |||||||| || Sbjct 297155 AGCTA-TGCTTTCAACATGAAACAGAC 297130 >seq118 Length=1478103 Score = 134 bits (148), Expect = 5e-26 Identities = 152/202 (75%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| ||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||| Sbjct 952907 GATGCTGTAATCACTGTTCCTGCCTATTTCAATGATGCTCAACGACAAGCTACTAAGGAT 952848 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| ||| ||||| | |||||||| | || || || ||||| || ||||||| | Sbjct 952847 GCAGCTGCTATCGCTGGACTGAATGTTCTGAGGATCATCAACGAACCGACTGCAGCTGGT 952788 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAG-aaaaaaaTATTTTAGTATTTGA 451497 |||| |||| ||||| || | |||| || ||| | |||| ||| | | | ||| Sbjct 952787 ATAGCTTATGCACTAG----ATGAGAAGACACCAAAGCAGCAAAACATTCTTATCTATGA 952732 Query 451498 TTTTGGTGGAGGAACTCATGAT 451519 ||| || ||||||||| |||| Sbjct 952731 TTTAGGAGGAGGAACTTTTGAT 952710 Score = 91.5 bits (100), Expect = 6e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 |||||||| || || || || || || ||||| ||| | ||||| ||||| || || ||| Sbjct 850034 GATGCAGTGATCACGGTACCTGCCTACTTCAACGATTCTCAACGCCAAGCTACCAAGGAT 850093 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTG 451436 |||| |||||||| || || ||||||||||| || |||||||| || || |||| Sbjct 850094 GCAGCTGCGATTGCTGGATTGAACGTTCTTCGAATAATCAATGAACCAACGGCTGCTG 850151 >seq109 Length=1818587 Score = 120 bits (132), Expect = 1e-21 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| || || |||||||| || || ||| | || Sbjct 529760 ATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTCC 529819 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || || || ||||||||||||||||| ||||| Sbjct 529820 GACACTATTGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 529879 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| |||| || || | |||||||||||||| || | || || ||| Sbjct 529880 CAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAAT 529939 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 529940 ATCCAAAAGGA 529950 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || |||||||| || || || || || | ||| Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || ||||| ||||||||||| ||||| ||||| Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| ||||| | || || || || || || || | || || ||||| || Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGCGATTACAAC 529711 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 529712 ATCCAGAAGGAATCTACTCTCCACTTGGT 529740 >seq84 Length=2481708 Score = 104 bits (114), Expect = 9e-17 Identities = 230/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 |||||||| || || ||||| || | || ||| ||| |||| ||| | | Sbjct 2060531 ATGGTTCTCACGAAGATGAAGGATATCGCCGAAGCCTATCTTGGAAAAGAAGTCAAGCAC 2060590 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || | || || ||||| || ||||| ||||| ||||| || ||||| || ||||| Sbjct 2060591 GCCGTGGTCACGGTCCCCGCCTACTTCAACGATGCTCAACGTCAGGCAACCAAGGATGCT 2060650 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| ||||| ||| | || || |||| || || ||||| || || || |||||| | Sbjct 2060651 GGAACCATTGCCGGTCTCAACGTCGTTCGCATCATCAATGAGCCCACTGCTGCTGCTATC 2060710 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || || || || ||| || ||| || | || || || || | || || ||| | Sbjct 2060711 GCCTACGGTCT-GGACAAG---AAGGAA--GGCGAGAAGAACATCCTCGTTTTCGATCTC 2060764 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || ||||||||| ||| || | || | || || |||| || || || || | Sbjct 2060765 GGAGGAGGAACTTTCGATGTCTCGCTTCTCACTATCGACAATGGAGTCTTCGAGGTTCTG 2060824 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || || || || || || ||||| |||||||||||| | ||| Sbjct 2060825 GCCACAAACGGAGACACCCATCTCGGAGGTGAAGATTTCGAT 2060866 >seq126 Length=3090016 Score = 91.5 bits (100), Expect = 6e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || ||||| || || ||| | || Sbjct 1375282 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACCATCACTCTCGAGGTCGAAGCTTCC 1375341 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | || || || || || |||||||||||||| || ||||| Sbjct 1375342 GATACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 1375401 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 || ||| | || ||| | || || || || |||||||| |||||| Sbjct 1375402 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGCAGAACT 1375446 >seq81 Length=934076 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || ||||| || || | ||| Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | ||| ||| || || || ||||| |||||||| || || || Sbjct 595180 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 595239 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || || || || || |||||| | || | | || || ||| Sbjct 595240 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAAT 595299 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || ||||||||||| Sbjct 595300 ATCCAGAAGGAGTCCACCCTTCACTTAGT 595328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975713565046628