Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq118 105 5e-17 seq84 100 2e-15 seq77 96.9 3e-14 >seq118 Length=1478103 Score = 105 bits (116), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 518157 || || ||| |||||| ||||| || || | |||| | ||||| | || || || Sbjct 952698 CATAACAGTGACATCAAAAGTTCCTCCTCCTAAATCATAGATAAGAATGTT--TTGCT-- 952753 Query 518158 GTCTTGGTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 | ||||| | | ||| || |||| || | | |||| ||||| ||||| || || | Sbjct 952754 GCTTTGGTGTCTTCTCATCTAGTGCATAAGCTATACCAGCTGCAGTCGGTTCGTTGATGA 952813 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 | |||| |||||| || ||||| || ||||||| ||||| ||||||| ||| | || Sbjct 952814 TCCTCAGAACATTCAGTCCAGCGATAGCAGCTGCATCCTTAGTAGCTTGTCGTTGAGCAT 952873 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | || ||||| ||||||||||| || || ||||| Sbjct 952874 CATTGAAATAGGCAGGAACAGTGATTACAGCATC 952907 Score = 100 bits (110), Expect = 2e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 ||| |||||| ||||| || |||| |||| | ||||| | |||| |||| | | || Sbjct 725673 AGTGACATCAAAAGTTCCTCCTCCCAGATCATAGATAAGAATATTC--TTCTGTTCCCTG 725616 Query 518164 GTTTTT--ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || || | | || | || |||| | ||||||||||||| || || || || | | Sbjct 725615 GTCTTCTCAACCAGTGCGTAAGCAATACCAGCAGCAGTTGGCTCGTTCATGATCCGAAGG 725556 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| || || || ||| | | ||||| || || ||||| | ||| ||||||||||| Sbjct 725555 ACATTCAGTCCCGCTATTTTAGCAGCATCCTTGGTAGCTTGACGTTGGGAATCGTTAAAG 725496 Query 518282 TATGCAGGAACAGTAATAACGGCATC 518307 || || |||||||| || || || || Sbjct 725495 TAGGCGGGAACAGTGATCACTGCCTC 725470 Score = 95.1 bits (104), Expect = 9e-14 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 ||| |||||| ||||| ||||||| || | ||||| || || || |||| ||| Sbjct 850237 AGTGACATCAAAAGTTCCTCCACCCAGGTCGTAGATAAGAACGTT---TTGCTTGT-TTG 850182 Query 518164 GTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 || | | ||| || | || |||| ||||||| ||||||||||| || |||| | Sbjct 850181 GTGTCTTCTCATCGAGCGCGTAAGCAATTCCAGCAGCCGTTGGTTCATTGATTATTCGAA 850122 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 ||| || | |||||||| ||||||| || || ||||| | ||| |||||||| | Sbjct 850121 GAACGTTCAATCCAGCAATCGCAGCTGCATCCTTGGTAGCTTGGCGTTGAGAATCGTTGA 850062 Query 518280 AATATGCAGGAACAGTAATAACGGCATC 518307 | || ||||| || || || || ||||| Sbjct 850061 AGTAGGCAGGTACCGTGATCACTGCATC 850034 >seq84 Length=2481708 Score = 100 bits (110), Expect = 2e-15 Identities = 206/306 (67%), Gaps = 3/306 (1%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| |||||||||||||| | | || | ||| || || || | ||| | ||| Sbjct 2060866 ATCGAAATCTTCACCTCCGAGATGGGTGTCTCCGTTTGTGGCCAGAACCTCGAAGACTCC 2060807 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || || | || | ||| | ||||| ||||| || || | ||| |||| || | Sbjct 2060806 ATTGTCGATAGTGAGAAGCGAGACATCGAAAGTTCCTCCTCCGAGATCGAAAACGAGGAT 2060747 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| | || | ||| || || || ||||| || || | |||||||||||| || || Sbjct 2060746 GTTCTTCTC---GCCTTCCTTCTTGTCCAGACCGTAGGCGATAGCAGCAGCAGTGGGCTC 2060690 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| || || | | || || ||||| ||||| |||| ||||| || || || || | Sbjct 2060689 ATTGATGATGCGAACGACGTTGAGACCGGCAATGGTTCCAGCATCCTTGGTTGCCTGACG 2060630 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 ||| | |||||| || || || || || || | ||||| | | |||||||| |||| Sbjct 2060629 TTGAGCATCGTTGAAGTAGGCGGGGACCGTGACCACGGCGTGCTTGACTTCTTTTCCAAG 2060570 Query 518326 ATAAGC 518331 ||| || Sbjct 2060569 ATAGGC 2060564 >seq77 Length=809317 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 ||||| || |||| |||||| || || |||| ||| | | || || ||||| Sbjct 298359 GTTCCTCCTCCCAGATCAAAGATCAGAACATGGCGTTCCCCATGTCCCTTCTTGTCAAGT 298418 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| |||||||||||| || || || || || | | |||||| || |||||| Sbjct 298419 CCGTAGGCAATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGAACATTGAGTCCAGCA 298478 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || ||| || ||||| || || || | ||| || ||||| ||||| || || || || Sbjct 298479 ATGGCTCCGGCGTCTTTGGTTGCCTGACGTTGAGAGTCGTTGAAATAAGCTGGCACGGTG 298538 Query 518297 ATAACGGCATC 518307 | |||||| || Sbjct 298539 ACAACGGCGTC 298549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780812921950846