Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq81 120 2e-22 seq126 116 2e-21 seq109 86.0 4e-12 >seq81 Length=934076 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| ||| || ||||| || || ||||| || ||| | ||| |||| || Sbjct 595328 ACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCG 595269 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || |||||||||| | || | ||||||||||| Sbjct 595268 AGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 595209 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | ||| ||||| || || | || ||||| ||| Sbjct 595208 ATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTT 595149 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||| || ||||||||||| Sbjct 595148 CCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| ||||||||||| ||||| || | | || |||| ||| Sbjct 595100 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCC 595041 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| ||||| || || |||| ||||||||| | || | ||||| ||||| Sbjct 595040 AATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 594981 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || ||| || || || | ||| ||||| | Sbjct 594980 ATCTTGGCCTTGAC--ATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATGGTCT 594923 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| || ||||| ||||||||||| Sbjct 594922 TGCCAGTGAGGGTTTTCACGAAGATCTGCAT 594892 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| || || || ||| | || ||||| ||| Sbjct 597137 ACCACGTGAAGGGTAGACTCCTTCTGGATGTTGTACTCAGACAGGGTACGATCATCTTCC 597078 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||||||||| || || || || | || || | |||||| ||||| Sbjct 597077 AACTGCTTTCCGGCAAAGATCAGACGCTGTTCATCAAAAGGAATTCCCTCCATGTCGAAG 597018 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || | || | | || | ||| ||||||||||| | | | ||| || Sbjct 597017 ATCTTGGCCTTCA-GGTTCATGACGGTGTCAGAAGCCTCAACATCCGGGATGAGGGTCTT 596959 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || |||||||| ||||||||||| Sbjct 596958 TCCAGTAAGGGTCTTCACGAAGATCTGCAT 596929 >seq126 Length=3090016 Score = 116 bits (128), Expect = 2e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 ||||||||| ||||| ||||||||||| || || | || |||| || ||||| || || Sbjct 1375753 TGTGCTTTCCTTCTGGATGTTATAGTCAGAGAGAGTACGACCATCTTCGAGCTGCTTGCC 1375694 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||| || || || || |||||||| | || | || |||||||| ||||| || Sbjct 1375693 GGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 1375634 Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 |||| | |||| || || || || |||| ||| |||||||| ||||| | ||| Sbjct 1375633 GACGTTCTCAATCGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGTCAAAGT 1375574 Query 34964 CTTCACAAAGATCTGCATA 34982 ||| || |||||||||||| Sbjct 1375573 CTTGACGAAGATCTGCATA 1375555 >seq109 Length=1818587 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || || || ||||| || || ||| | |||| |||| ||| || || || || Sbjct 529951 TTCCTTTTGGATATTGTAGTCGGACAGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAA 529892 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||| || | || | || |||||||| ||||| ||||||| Sbjct 529891 GATCAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTT 529832 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || ||| || || |||| || || || || || ||||| || ||||| Sbjct 529831 TTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCAC 529772 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 529771 GAAGATCTGCAT 529760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632844313848