Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq77 138 9e-27 seq118 107 2e-17 seq128 105 5e-17 seq109 102 7e-16 seq134 98.7 8e-15 seq84 98.7 8e-15 >seq77 Length=809317 Score = 138 bits (152), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC----CAG 550371 ||| | || ||| | ||||| ||||||||| | | |||||||| |||| || ||| Sbjct 298630 TTTACTCCGGAAGAGATTTCTTCTATGGTTCTGGTCAAAATGAAGGAAACTGCTGAACAG 298571 Query 550372 TGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGA 550431 | | | ||||| || | ||| || || | || || ||||| ||||| || || Sbjct 298570 TTCCTC----GGTCAGACGGTCAAGGACGCCGTTGTCACCGTGCCAGCTTATTTCAACGA 298515 Query 550432 CTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTAT 550491 ||| |||||||| || || ||||| || ||| ||||||||||| |||||||||||||| Sbjct 298514 CTCTCAACGTCAGGCAACCAAAGACGCCGGAGCCATTGCTGGACTCAATGTTCTTCGTAT 298455 Query 550492 TATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || || ||||||||||| |||| || |||||||| || Sbjct 298454 CATCAACGAGCCGACTGCTGCTGCTATTGCCTACGGACTTGACAA 298410 >seq118 Length=1478103 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||||| ||||| || || ||||| ||||| | ||||| ||||||||||| || Sbjct 952908 GGATGCTGTAATCACTGTTCCTGCCTATTTCAATGATGCTCAACGACAAGCTACTAAGGA 952849 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | ||| |||||||| |||||||| | || ||||| ||||| ||||| |||| Sbjct 952848 TGCAGCTGCTATCGCTGGACTGAATGTTCTGAGGATCATCAACGAACCGACTGCAGCTGG 952789 Query 550516 ACTTGCATATGGACTTGAT 550534 | || |||| ||| ||| Sbjct 952788 TATAGCTTATGCACTAGAT 952770 Score = 104 bits (114), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 550381 TGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 |||||||| || ||||||||| || || ||||| || || || || || || ||||| Sbjct 850020 TGGTCAAGC--TTCAGGATGCAGTGATCACGGTACCTGCCTACTTCAACGATTCTCAACG 850077 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 |||||||| || ||||| | ||||||||| | || |||||||| || |||||||| Sbjct 850078 CCAAGCTACCAAGGATGCAGCTGCGATTGCTGGATTGAACGTTCTTCGAATAATCAATGA 850137 Query 550501 ACCTACTGCTGCTGCACTTGCATA 550524 ||| || ||||||| | |||| || Sbjct 850138 ACCAACGGCTGCTGGAATTGCTTA 850161 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| ||||| || ||||| || || || ||||| || || |||||||||||||| || || Sbjct 725469 GGAGGCAGTGATCACTGTTCCCGCCTACTTTAACGATTCCCAACGTCAAGCTACCAAGGA 725528 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| || || ||||| ||||| ||||| || || || || || |||||||||| Sbjct 725529 TGCTGCTAAAATAGCGGGACTGAATGTCCTTCGGATCATGAACGAGCCAACTGCTGCTGG 725588 Query 550516 ACTTGCATATGGACT 550530 |||| || | ||| Sbjct 725589 TATTGCTTACGCACT 725603 Score = 93.3 bits (102), Expect = 3e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 361720 AGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCTATTTTTGATGCATC 361779 |||||| ||||| ||||| || || || ||||| |||||||||||||| | ||||| Sbjct 725586 AGCAGCAGTTGGCTCGTTCATGATCCGAAGGACATTCAGTCCCGCTATTTTAGCAGCATC 725527 Query 361780 TAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTAATCACTGC 361833 || ||||||||||| | ||| ||||| || || |||||||| |||||||| Sbjct 725526 CTTGGTAGCTTGACGTTGGGAATCGTTAAAGTAGGCGGGAACAGTGATCACTGC 725473 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || ||||| || || || || || || || || ||||||||||| ||||| Sbjct 1039414 GGAGGCCGTGATCACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAAGA 1039473 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTG 550514 ||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 1039474 TGCTGCTAAAATAGCGGGACTGAAGGTTCTTCGTATCATCAATGAGCCAACAGCTGCTG 1039532 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 361707 CATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCTA 361766 ||||||||| ||| || || |||||||| || || | | |||||| ||||| || | Sbjct 952778 CATAAGCTATACCAGCTGCAGTCGGTTCGTTGATGATCCTCAGAACATTCAGTCCAGCGA 952837 Query 361767 TTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTAA 361826 | | |||||| ||| ||||| ||||| |||||||| ||||| ||||||||||| | Sbjct 952838 TAGCAGCTGCATCCTTAGTAGCTTGTCGTTGAGCATCATTGAAATAGGCAGGAACAGTGA 952897 Query 361827 TCACTGC 361833 | || || Sbjct 952898 TTACAGC 952904 >seq128 Length=1396673 Score = 105 bits (116), Expect = 5e-17 Identities = 210/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAAT 552356 || || |||||| | |||||||||||||| | || || | |||||| | ||||| || Sbjct 1140096 CTGGTCGATGTTGCCCCTCTATCTCTTGGAATCGAGACGGCCGGAGGTGTCATGACAAAG 1140037 Query 552357 CTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT-ATTTTC--TACGTAT 552413 || | || || || ||| || || | || | || || ||| ||| ||| Sbjct 1140036 CTCGTTGAAAGGAACACTCGCATCCCG---ACCAAGGCCAGTCAGATCTTCAGTACCTAT 1139980 Query 552414 TCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAA 552473 | || || || ||| ||||| || || | |||||||||||| || | || || Sbjct 1139979 GCGGACAACCAGCCTGGTGTTAGCATCCAGGTCTTTGAAGGAGAACGAGCCATGACCAAG 1139920 Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533 || ||| | | ||| ||||| ||| | | |||||||| || ||||| ||||| || Sbjct 1139919 GACAATCACCGACTCGGTACCTTTGAGCTGACTGGTATTCCGCCAGCTCCACGTGGTGTG 1139860 Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGT 552593 |||||| | ||||| || ||| | || || ||||| |||||| ||| ||| ||||| Sbjct 1139859 CCGCAAGTCGAAGTCACCTTCAACATTGACGCCAACGGAATTCTGAGTGTCTCTGCTGAG 1139800 Query 552594 GATAAATC 552601 || ||||| Sbjct 1139799 GACAAATC 1139792 Score = 95.1 bits (104), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || ||||| || || || ||||||||| || | |||||||| || || Sbjct 1140899 GGATGCCGTCATCACTGTGCCGGCCTACTTTAATGACAGTCAGAGACAAGCTACCAAGGA 1140840 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| || || || || |||| ||||||| |||||||| || ||||||||||| Sbjct 1140839 TGCTGCTACCATCGCCGGTCTGAATGCCATTCGTATCATCAATGAGCCGACTGCTGCTGC 1140780 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA--- 550572 || || |||||| | || | | || || || | |||| ||||||||||| Sbjct 1140779 TCTAGCCTATGGATTGGACA---AGAAGGACGGCGAGCGGTATGTGCTCATCTTTGACCT 1140723 Query 550573 TTGTGGAGG 550581 | ||||||| Sbjct 1140722 TGGTGGAGG 1140714 >seq109 Length=1818587 Score = 102 bits (112), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || || ||||| || ||| ||| ||||| |||||||| || | || |||| Sbjct 529977 AGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGG--ATATTGTAGTCGGACAGCGTTC 529920 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || |||||| | || || || || || || || | ||||||||| ||||||||||||| Sbjct 529919 TTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTT 529860 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || || || || ||| || ||||| || || | | | | | ||||||| Sbjct 529859 CCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAG-GCTTCGACTTCGAGA 529801 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| || ||||| ||||| || ||||| Sbjct 529800 GTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 >seq134 Length=1347776 Score = 98.7 bits (108), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || ||||| || || || ||||| ||| |||||||| ||||| || || Sbjct 915778 GGATGCCGTCATCACTGTGCCGGCCTACTTTAACGACAGTCAACGTCAGGCTACCAAGGA 915837 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| ||||||||||| |||| |||| || |||||||| || || || ||||| Sbjct 915838 TGCTGCCACCATTGCTGGACTCAATGCCATTCGAATCATCAATGAGCCGACAGCCGCTGC 915897 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA--- 550572 || || || ||||| || || | ||| | | || |||| || ||||| || Sbjct 915898 TCTGGCCTACGGACTGGACAAGAAGGATGGTGACAGAC---ATGTTCTAATCTTCGACCT 915954 Query 550573 TTGTGGAGGTA 550583 | ||||||||| Sbjct 915955 TGGTGGAGGTA 915965 >seq84 Length=2481708 Score = 98.7 bits (108), Expect = 8e-15 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || | || || || || ||||| || ||||| || |||||||| || ||||| Sbjct 1148561 GGACGCCGTTGTCACCGTGCCGGCTTATTTCAACGACTCTCAGCGTCAAGCCACCAAAGA 1148620 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || ||| || || || || |||||||| ||||| ||||| || || ||||| ||||| Sbjct 1148621 CGCCGGAGCCATCGCCGGTCTGAATGTTCTCCGTATCATCAACGAGCCAACTGCCGCTGC 1148680 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAG---AACTTAATGTACTCATCTTTGA 550572 |||| || || || || || || | ||| | ||| || || ||||||||||| Sbjct 1148681 CATTGCCTACGGCCTGGACAAG---AAGGGTCACGGTGAACGCAACGTCCTCATCTTTGA 1148737 Query 550573 TTGTGGAGG 550581 | |||||| Sbjct 1148738 TCTTGGAGG 1148746 Score = 86.0 bits (94), Expect = 5e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 550340 ATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGAT 550399 |||||| | | ||| ||||| | | ||| || | | |||| ||||||| | | | Sbjct 2060531 ATGGTTCTCACGAAGATGAAGGATATCGCCGAAGCCTATCTTGGAAAAGAAGTCAAGCAC 2060590 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || | || || || || || || || || | |||||||| || || || |||||| Sbjct 2060591 GCCGTGGTCACGGTCCCCGCCTACTTCAACGATGCTCAACGTCAGGCAACCAAGGATGCT 2060650 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| ||||| || || || || |||| || |||||||| || ||||||||||| | Sbjct 2060651 GGAACCATTGCCGGTCTCAACGTCGTTCGCATCATCAATGAGCCCACTGCTGCTGCTATC 2060710 Query 550520 GCATATGGACTTGATAA 550536 || || || || || || Sbjct 2060711 GCCTACGGTCTGGACAA 2060727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029285899058590