Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq81 93.3 3e-14 seq126 91.5 1e-13 seq109 82.4 6e-11 >seq81 Length=934076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || || || || ||| ||| || || |||||||| ||||| || | || | || || Sbjct 595328 ACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCG 595269 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| || || || || | ||||| ||||||||||| Sbjct 595268 AGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 595209 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| || | | | || || ||||| || || | || || || ||| Sbjct 595208 ATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTT 595149 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| || || || |||||||| Sbjct 595148 CCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| ||||| || | ||||| || ||||||||||| |||||||| Sbjct 597120 CTCCTTCTGGATGTTGTACTCAGACAGGGTACGATCATCTTCCAACTGCTTTCCGGCAAA 597061 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| ||||||| ||| |||| |||||| ||||| ||||| Sbjct 597060 GATCAGACGCTGTTCATCAAAAGGAATTCCCTCCATGTCGAAGATCTT 597013 >seq126 Length=3090016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || || ||| || || || ||||| || || ||| | ||| Sbjct 1376314 AGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 1376255 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || || ||||| || || | || | ||| ||| Sbjct 1376254 CCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCCTTCC 1376195 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | || || ||||||||||| | || Sbjct 1376194 TTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAGGGTG 1376135 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||| ||| || || ||||| ||||| Sbjct 1376134 ATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||||| || || || || || || ||||| ||| | ||| | || || | ||| Sbjct 1375759 ATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAGAGAGTACGACCATCTTCGAGCTG 1375700 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || || || ||||| || |||| |||| || |||||||| ||||| Sbjct 1375699 CTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 1375640 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || || | | | || || || || || || | || || ||||| ||||| Sbjct 1375639 TGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGT 1375580 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || |||||||| Sbjct 1375579 CAAAGTCTTGACGAAGATCTGCAT 1375556 >seq109 Length=1818587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| ||||| || ||||| |||||||| || || || ||| Sbjct 529977 AGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTTCTT 529918 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || || || ||||| || || ||||| | |||| || ||| Sbjct 529917 CCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCTTCC 529858 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | || || || || || || || | ||| Sbjct 529857 TTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGAGTA 529798 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | ||||| || || |||||||| Sbjct 529797 ATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936713248693