Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq109 132 9e-26 seq126 122 2e-22 >seq109 Length=1818587 Score = 132 bits (146), Expect = 9e-26 Identities = 392/602 (65%), Gaps = 23/602 (4%) Strand=Plus/Minus Query 212812 CGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCC 212871 ||| ||| || || ||||| || ||| | |||||| || ||||||||| |||| Sbjct 201456 CGGCGATTTTTTGAACAGAGCCATTGTTGGAGATCAGCTCCATCTTCATGTCCTCATTCC 201397 Query 212872 AGAGGCCCCTGGTCTCCAGGCAC-TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCT 212930 | || || | || || | | |||| || || ||||| || || |||||||| || Sbjct 201396 ATAGTCCGA-GCTCGACAAGATCCTTGAGAAGATGTGGGTTTACAATTTGGAAGTCTCCC 201338 Query 212931 GAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCC 212990 || ||||| | | ||| | ||| || ||||||||||| ||| ||||||||| || Sbjct 201337 GACAGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAATGGACTCGTTGTTTCCA 201278 Query 212991 AGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCG 213050 ||||| || ||||| ||| |||||||| ||||||| ||| |||||||| | | ||| Sbjct 201277 AGAATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCAGCAGACTGTTACGGATTCCA 201218 Query 213051 TGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCC 213110 | || ||| ||||| |||||| ||| ||||| | ||| Sbjct 201217 TTCTTCTTGATCTTCTCGCGAAGAGTGAGCCAGTCGCATTGGCCAGGC-GGT-------- 201167 Query 213111 TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAG 213170 | || |||||| || || |||| ||| |||||| || || ||||||| ||| | Sbjct 201166 GTAACTCCCCACATATCGAATTGCAGGATTCCTTTGGAGACCGGACTGCCCTCGTACGTC 201107 Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 |||||| || | | || |||||| || || || |||| ||| || ||| ||||| Sbjct 201106 TCGTAGGGACCGAGTTGCTCGGCCAGTTCACAAGATGCCTCCAGAGCTCCGTGATAGATC 201047 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGA------AGGGCATC 213284 || || || || | |||| | | ||| || || || ||| || ||||| Sbjct 201046 GTCTCGAAGATTCGCTTGTTCAAATCTCGGGCTTCGGGAGAATTGAAGTTGTAGCGCATC 200987 Query 213285 ATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTC 213344 | ||| ||| |||| || || ||||| || || | |||||||| | || | Sbjct 200986 AACAT------GAAAGCATCGGCAAGGCCCTGTACTCCCAGTCCGATGGGACGATGACGT 200933 Query 213345 AGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGG 213404 | ||| || || | ||| | || ||| | || ||||||||||||||| || Sbjct 200932 ATGTTTGAATTACGGGCTTCCGGAACCGGATAATAATTAATGTCGATGATCTTGTTCAGA 200873 Query 213405 TT 213406 || Sbjct 200872 TT 200871 >seq126 Length=3090016 Score = 122 bits (134), Expect = 2e-22 Identities = 315/485 (65%), Gaps = 39/485 (8%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||| | || | || || |||||||| || || || || ||||| |||||| Sbjct 2638344 AGGCCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATGGCAGCAAATGAGCCGGAGAAG 2638285 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 ||||| ||||| || || ||||| || | | | ||| |||| ||||| | | ||| Sbjct 2638284 AAGATTCCCTCGACAGCAGCGAAGGCAATCACTCGCTCGGCGAACGAAGCCTCGTCGTCG 2638225 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | |||||| || ||||| || ||||||||||||||||| || | | ||||| Sbjct 2638224 GCAATCCAGCGCAGAGCCCAATCGGCCTTCTTCTTGATGCAGGGAAACTCGAAGATGGCG 2638165 Query 48368 CGGAAGA---GCTTCTTGCA-----------------------------CTCACCT-GCG 48394 ||||| | ||| || | | |||| || Sbjct 2638164 TTGAAGAGACGGTTCCTGAATGATGAGTTGAGGTAAGATAAGGCGAAATCAAACCTCTCG 2638105 Query 48395 TC-----CGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCT 48448 | ||| | |||||| || ||||| ||||||||| || || | ||||| Sbjct 2638104 ACAGGATCGCGGATATAGGTTTCGATTAGCTTGCTGTACATCTCCGAATGAATGTTCTCG 2638045 Query 48449 ATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAAT 48508 || ||||| ||||| ||||||||| | ||||| | | ||| |||||| |||||||| Sbjct 2638044 ATGGCGATTTGGAAGCCGTAGAAGAAACGAGCCTCGGATATCTGGACTTCTTTGGAGAAT 2637985 Query 48509 CTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGT 48568 | ||| | || ||||| ||||| || ||||| || || || |||||||| | ||| | Sbjct 2637984 CGCTCGACAAGGTTCTCGTTGACGATTCCATCAGAGGCGGCGAAGAAGGCCAAAACACGA 2637925 Query 48569 TTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGG 48628 | ||| | ||||| || ||| | || | |||| ||| | ||||||||| || Sbjct 2637924 GAGATGAAGAATCTCTCGTCGTCGGTCATGGCCTCCCAGTCCTTCATGTCTTTGCCGAGA 2637865 Query 48629 TCCAC 48633 ||||| Sbjct 2637864 TCCAC 2637860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530575965440