Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq109 138 2e-27 seq126 89.7 1e-12 >seq109 Length=1818587 Score = 138 bits (152), Expect = 2e-27 Identities = 391/599 (65%), Gaps = 21/599 (4%) Strand=Plus/Minus Query 221021 GCGATAGCTTGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCAT 221080 ||||| ||| |||||||| |||||| | ||||| | ||| || || ||||| Sbjct 201454 GCGATTTTTTGAACAGAGCCATTGTTGGAGATCAGCTCCATCTTCATGTCCTCATTCCAT 201395 Query 221081 AGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAG 221140 || || ||| | || |||||| | || ||| || | |||||| |||||||| Sbjct 201394 AGTCCGAGCTCGACAAGATCCTTGAGAAGATGTGGGTTTACAATTTGGAAGTCTCCCGAC 201335 Query 221141 AGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGG 221200 ||||| | | ||| | ||| || ||| | || || ||| ||||||||| || || Sbjct 201334 AGCACACGACGACTGTATATGTTCGAGGTGTAGGGCTCAATGGACTCGTTGTTTCCAAGA 201275 Query 221201 ATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAAT 221260 || ||||| || ||| |||||||| || |||| |||||||||||| || | ||| | | Sbjct 201274 ATTTGAGCAGTCGAGGCAGTGGGCATAGGAGCCATCAGCAGACTGTTACGGATTCC-ATT 201216 Query 221261 CTA-TTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCCCAGGTCNNNNNNNNN 221319 || ||||| || | || ||| |||||| || || || | ||| Sbjct 201215 CTTCTTGATCTTCTCGCGAAGAGTGAGCCAGTCGCATTGGCCAGGC-GGT--------GT 201165 Query 221320 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTACGACTC 221379 || || |||||||| || ||||||| ||| Sbjct 201164 AACTCCCCACATATCGAATTGCAGGATTCCTTTGGAGACCGGACTGCCCTCGTACGTCTC 201105 Query 221380 GTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGG 221438 |||||||||| | |||||| | | ||||| ||| || || || |||| ||||| | Sbjct 201104 GTAGGGACCGAGTTGCTCGGCCAGTTCACAAGA-TGCCTCCAGAGCTCCGTGATAGATCG 201046 Query 221439 TCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGTGAAGGGCATACGCAGC 221497 |||| ||||| |||||| | |||| ||| ||||||||| ||||| |||| | Sbjct 201045 TCTCGAAGATTCGCTTGTTCAAATCTCG-GGCTTCGGGAGAATTGAAGTTGTAGCGCATC 200987 Query 221498 ATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTT 221556 | | |||||| | ||||| || ||||||||||| | |||||||| | || | |||| Sbjct 200986 AACATGAAAG-CATCGGCAAGGCCCTGTACTCCCAGTCCGATGGGACGATGACGTATGTT 200928 Query 221557 GGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTT 221613 ||| ||| ||||| || || |||||| | || | |||||| | ||||| || || Sbjct 200927 TGAATTACGG--GCTTCCGGAACCGGATAATAATTAATGTCGATGATCTTGTTCAGATT 200871 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 221975 TCGTCCAGGCCTGGACACCTGGCG-GGACACATCAGACTCCAGTGCTTGTTGTCTTTGAC 222033 ||||||| || ||||| | || ||||||||||| ||||| | | | || ||| Sbjct 200446 TCGTCCAAACCGGGACAT-TCACGAGGACACATCAGCGACCAGTCGGTATCTTGTTCGAC 200388 Query 222034 CCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTC 222093 |||| |||||| || || ||||||||||| ||| |||||||||| | | |||| ||| Sbjct 200387 TCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAGAGATCACGAGCACGCTCCTC 200328 Query 222094 CTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTC 222153 || || |||| || |||||| | || ||||| || || |||||||||||||| Sbjct 200327 TTCGGGACCAGTGTTCTTTCTCAGAGAGCAGAATTCAAAGATATCTGCGTGCCACGGCTC 200268 Query 222154 CAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || |||| ||| | ||| || || ||||| || || ||||| || || Sbjct 200267 GAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCCTGGTCGAC 200220 >seq126 Length=3090016 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||||||| |||||| ||||| || ||||| | | | ||| ||| | Sbjct 2638181 CCCTGCATCAAGAAGAAGGCCGATTGGGCTCTGCGCTGGATTGCCGACGACGAG-GCTTC 2638239 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 ||| | |||||| || | ||||| |||||||| ||||| ||||| ||| ||| || || Sbjct 2638240 GTTCGCCGAGCGAGTGATTGCCTTCGCTGCTGTCGAGGGAATCTTCTTCTCCGGCTCATT 2638299 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| |||||||||||||| ||| || || |||||||| ||| Sbjct 2638300 TGCTGCCATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGCCTG 2638345 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTC-- 25588 ||||| | ||| |||||| | | |||| | || | || | |||||| || | ||| Sbjct 2637863 GATCTCGGCAAAGACATGAAGGACTGGGAGGCCATGACCGACGACGAG-AGATTCTTCAT 2637921 Query 25589 -TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 || || || ||||| ||||| || ||||||||||| || || |||||||| || | Sbjct 2637922 CTCTCGT--GTTTTGGCCTTCTTCGCCGCCTCTGATGGAATCGTCAACGAGAACCTTGTC 2637979 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 ||| ||||| ||| ||||| ||| ||||| | |||||||| ||||| || Sbjct 2637980 GAGCGATTCTCCAAAGAAGTCCAGATATCCGAGGCTCGTTTCTTCTACGGCTTCCAAATC 2638039 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745 |||||||| || | || || ||| |||| |||||| Sbjct 2638040 GCCATCGAGAACATTCATTCGGAGATGTACAGCAAGCT 2638077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842582383040