Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq109 116 2e-20 seq77 111 1e-18 seq126 109 4e-18 >seq109 Length=1818587 Score = 116 bits (128), Expect = 2e-20 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || |||||||| | ||| || ||||| ||||| |||||||||||| Sbjct 529686 TCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTG 529627 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| |||||| ||| ||||| |||| | | | ||| ||||| || Sbjct 529626 TCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGA-CTTCGAGGGTGAT 529568 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||||||||| || ||||| ||||| Sbjct 529567 AGTTTTTCCGGTGAGAGTTTTGACGAAGATTTG 529535 Score = 114 bits (126), Expect = 8e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || || || ||||| || ||| ||| || | ||| || || | || ||| Sbjct 529980 CGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTT 529921 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || |||||| | ||||| || || || || |||||||| ||||| |||||||||||| Sbjct 529920 CTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCT 529861 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| |||||| ||||||||| || | | | ||| || Sbjct 529860 TCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGA 529801 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| || || ||||| || || Sbjct 529800 GTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTG 529763 Score = 89.7 bits (98), Expect = 3e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct 530181 TCCTCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTTG 530122 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||| ||||| |||||| ||| ||||| |||| Sbjct 530121 TCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAG 530085 >seq77 Length=809317 Score = 111 bits (122), Expect = 1e-18 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCA 474712 ||| | |||||| | |||||||| |||||| | | ||||||||| |||| || | || Sbjct 298630 TTTACTCCGGAAGAGATTTCTTCTATGGTTCTGGTCAAAATGAAGGAAACTGCT-GAACA 298572 Query 474713 TATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771 || | | ||| | | | || || || | || || ||||| ||||| || || || Sbjct 298571 GTTCCTCGGTCAGACGGTCAAGGACGCCGTTGTCACCGTGCCAGCTTATTTCAACGACTC 298512 Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831 ||||||||| ||||| ||||| || ||| ||||| || || |||||| | ||||| || Sbjct 298511 TCAACGTCAGGCAACCAAAGACGCCGGAGCCATTGCTGGACTCAATGTTCTTCGTATCAT 298452 Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || || |||| || || ||||| ||||| Sbjct 298451 CAACGAGCCGACTGCTGCTGCTATTGCCTACGGACTTGACAAGAA 298407 >seq126 Length=3090016 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || ||||| ||||| ||||| || | ||||| |||| ||||| Sbjct 1375776 CGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAGAGAGTA 1375717 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| || || || || ||||| || || || |||||||||||| Sbjct 1375716 CGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCT 1375657 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || |||||| ||||| ||||| || || | | ||| ||| Sbjct 1375656 TCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACTTCGAGG 1375597 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || | |||||| ||||| || || Sbjct 1375596 GTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTG 1375559 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||||| |||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 1375448 AGAGTTCTGCCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1375389 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 |||||||||||||| || ||||| ||||| ||| || ||||| | | Sbjct 1375388 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACC 1375329 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||||||||| || ||||| ||||| Sbjct 1375328 TCGAGAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTG 1375285 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | |||||| ||| || || | || || || | ||||| Sbjct 1376318 ACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1376259 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| || || || |||||||| || || ||||| || || || Sbjct 1376258 ACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCC 1376199 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| |||||| || || || || | | | | || | Sbjct 1376198 TTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCA-CCTCGA 1376140 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || ||||| || |||||||| ||||||||||| Sbjct 1376139 GGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTG 1376100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268171007083268