Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq81 102 1e-16 seq109 100 4e-16 >seq81 Length=934076 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| ||||| || || ||| | |||||||| | |||| Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || || || || || || || ||||| || Sbjct 595180 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 595239 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| ||||||||||| ||| | || | || || || ||| Sbjct 595240 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAAT 595299 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| ||||| Sbjct 595300 ATCCAGAAGGAGTCCACCCTTCACTTAGT 595328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 155856 ACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAA 155915 ||||| || | || || || | ||| || | |||| |||||||| ||| || || Sbjct 595693 ACTATCACTCTCGAGGTTGAGGCTTCCGACACTATTGAGAACGTGAAGGCTAAGATCCAG 595752 Query 155916 GATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAA 155975 ||||| || || || || ||||| || ||||||||||| | ||||| ||||||||||| Sbjct 595753 GATAAGGAGGGAATTCCCCCAGACCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTCGAG 595812 Query 155976 GATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| | || | || || || ||||| || ||| | || ||||| ||||| Sbjct 595813 GATGGACGTACCCTCTCTGACTACAATATCCAGAAGGAGTCCACCCTTCACTTAGT 595868 >seq109 Length=1818587 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || ||||||||||| || | |||||||| | |||| Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || ||||| || ||||| || || Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | ||||||| |||||| ||||||||||| || Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGA 529686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870252655600