Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq109 176 4e-39 seq81 127 2e-24 seq126 113 4e-20 seq76 86.0 6e-12 >seq109 Length=1818587 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||||| || || || || ||||| |||||||| |||||| || Sbjct 529760 ATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTCC 529819 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||| ||||| |||||||| ||||||||||| Sbjct 529820 GACACTATTGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 529879 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| ||||||| || || || ||| |||| ||| |||| |||| || || || Sbjct 529880 CAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAAT 529939 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || || | || ||||| | |||||||| Sbjct 529940 ATCCAAAAGGAATCTACGCTCCATCTCGTCCTGCGACTTCGCGGAGG 529986 Score = 158 bits (174), Expect = 1e-33 Identities = 165/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||| ||||| | ||||| || ||||| |||||||| || |||||||| || || Sbjct 529530 CGATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTT 529589 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | ||||| | |||| || || |||||||||||||| |||||||| |||||||||| Sbjct 529590 CTGACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATC 529649 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTA 24879 | || |||||||| |||||||| || ||||| ||||| ||| | || || ||||| Sbjct 529650 AGCAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCG-CACAC-TGAGCGATTA 529707 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || |||||||| || || |||||||| Sbjct 529708 CAACATCCAGAAGGAATCTACTCTCCACTTGGT 529740 Score = 113 bits (124), Expect = 4e-20 Identities = 134/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAA 24796 || ||||| || || || ||||| | ||||| | |||| || || ||||||||| Sbjct 530060 ACCATTACTCTAGAGGTCGAAGCTTCTGACACTATCGAAAATGTCAAGGCCAAGATCCAA 530119 Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||| |||||||| ||||||||||| || ||| |||| |||||||| || ||||| ||| Sbjct 530120 GACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAG 530179 Query 24857 GA--TTCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||| ||| || || || ||||| |||||||| || || || |||||||| Sbjct 530180 GACGGTCG---CACATTGAGCGACTACAACATCCAAAAGGAGTCTACCCTCCACTTGGT 530235 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAA 24796 ||||| || || || || ||||| | ||||| | |||| || || |||||||| Sbjct 530330 ACTATCACCCTGGAGGTCGAAGCTTCGGACACCATTGAAAACGTCAAGGCCAAGATCCAG 530389 Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||||||||| || ||||||||||| || | | ||||||||||| || ||||||||| Sbjct 530390 GACAAAGAAGGCATTCCTCCCGATCAGCAGAGACTCATCTTTGCCGGCAAGCAGCTGGAG 530449 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| | | | | || || ||||| |||||||| ||||| || || | || || Sbjct 530450 GATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCGACTCTCCATCTCGTCCTG 530509 Query 24917 CGATTGCGCGGAGG 24930 || | || ||||| Sbjct 530510 CGTCTTCGTGGAGG 530523 >seq81 Length=934076 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || ||||| |||||| | Sbjct 594892 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTCG 594951 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| |||||||| ||||| || || || || Sbjct 594952 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 595011 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||||| |||||||| | | |||| || || ||| Sbjct 595012 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 595071 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| || || |||||||| | ||| | || || ||| Sbjct 595072 ATTCAGAAGGAATCCACCCTTCACTTGGTCCTCCGACTTCGTGGTGGC 595119 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || ||||| |||||| | Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| |||||||||||||| || || || || Sbjct 596761 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 596820 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||||| |||||||| | | |||| || || ||| Sbjct 596821 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 596880 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || | || ||||| | || ||||| Sbjct 596881 ATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGACTTCGTGGAGG 596927 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || ||||| || || | Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||||| ||||| || ||||| || || || || Sbjct 595180 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 595239 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || ||||| |||||| | | | | || || || || Sbjct 595240 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAAT 595299 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||| || | ||| | || || || Sbjct 595300 ATCCAGAAGGAGTCCACCCTTCACTTAGTCCTCCGACTTCGTGGTGG 595346 >seq126 Length=3090016 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || |||||||| ||||| | Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| |||||||| ||||| || || Sbjct 1375616 GACACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 1375675 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| || ||| | | | || || |||||| Sbjct 1375676 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAAC 1375735 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||| ||||| || | || | || |||| ||||| Sbjct 1375736 ATCCAGAAGGAAAGCACACTCCATCTCGTCCTTCGTCTGCGAGGAGG 1375782 >seq76 Length=529262 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| ||||| || ||||| || || ||| | Sbjct 256008 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAGACTATCACCCTCGAGGTCGAGGCCTCT 255949 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || ||||| || || || || Sbjct 255948 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCTGACCAG 255889 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||||||||||| ||||| Sbjct 255888 CAGCGTTTGATCTTCGCCGG 255869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896525869480