Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq81 132 4e-26 >seq81 Length=934076 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| |||||||| || |||||||| || || | | ||||| | Sbjct 595106 CGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCA 595047 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||||||| || | || | ||| ||||| || || ||||| ||||||||| Sbjct 595046 TCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTG 594987 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| || ||| |||||||| || || Sbjct 594986 TCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAGGGTGATG 594927 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| | |||||| || || ||||||||| Sbjct 594926 GTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCATT 594891 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || || ||||| ||||| || || || || || || || | | ||| || | Sbjct 595334 CGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCA 595275 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | |||||||||||||| || || ||||| ||||| ||| Sbjct 595274 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTG 595215 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | || |||||| || |||||||| || || Sbjct 595214 TCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATG 595155 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || || |||||||| Sbjct 595154 GTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| || | ||| || || || || || |||||||| || || | Sbjct 596928 TCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 596869 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | ||||||||| || | || | ||| ||||| || || || Sbjct 596868 CAAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGG 596809 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || | || || || | || | ||||| || ||| || Sbjct 596808 GATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGAC 596749 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || || || ||||| | ||| || || || |||||||| Sbjct 596748 TTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 596701 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | || | ||| ||||| || || ||||| ||||||||||| || | || Sbjct 596567 CCAGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCC 596508 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 |||||| | || | ||||| ||| ||| |||||||| || || || |||||||| | | Sbjct 596507 TTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTGAGG 596448 Query 29767 GTTTTAACAAATATCTGCATT 29787 ||||| || || ||||||||| Sbjct 596447 GTTTTCACGAAGATCTGCATT 596427 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| || | ||| || || || || || || || || || || | Sbjct 596157 TCCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGA 596098 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| ||||| || || ||||| | || | ||| ||||| || || || Sbjct 596097 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCTGGGGG 596038 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || | || |||||| | || | ||||| || ||| || Sbjct 596037 GATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGAC 595978 Query 29739 TTCAAGAGTTATAGT 29753 ||||||||| || || Sbjct 595977 TTCAAGAGTGATGGT 595963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218303281931