Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq118 105 5e-17 seq84 104 2e-16 seq77 96.9 3e-14 >seq118 Length=1478103 Score = 105 bits (116), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 || || ||| |||||| ||||| || || | |||| | ||||| | || || || Sbjct 952698 CATAACAGTGACATCAAAAGTTCCTCCTCCTAAATCATAGATAAGAATGTT--TTGCT-- 952753 Query 282325 GTCTTGGTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 | ||||| | | ||| || |||| || | | |||| ||||| ||||| || || | Sbjct 952754 GCTTTGGTGTCTTCTCATCTAGTGCATAAGCTATACCAGCTGCAGTCGGTTCGTTGATGA 952813 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 | |||| |||||| || ||||| || ||||||| ||||| ||||||| ||| | || Sbjct 952814 TCCTCAGAACATTCAGTCCAGCGATAGCAGCTGCATCCTTAGTAGCTTGTCGTTGAGCAT 952873 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | || ||||| ||||||||||| || || ||||| Sbjct 952874 CATTGAAATAGGCAGGAACAGTGATTACAGCATC 952907 Score = 100 bits (110), Expect = 2e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 ||| |||||| ||||| || |||| |||| | ||||| | |||| |||| | | || Sbjct 725673 AGTGACATCAAAAGTTCCTCCTCCCAGATCATAGATAAGAATATTC--TTCTGTTCCCTG 725616 Query 282331 GTTTTT--ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || || | | || | || |||| | ||||||||||||| || || || || | | Sbjct 725615 GTCTTCTCAACCAGTGCGTAAGCAATACCAGCAGCAGTTGGCTCGTTCATGATCCGAAGG 725556 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| || || || ||| | | ||||| || || ||||| | ||| ||||||||||| Sbjct 725555 ACATTCAGTCCCGCTATTTTAGCAGCATCCTTGGTAGCTTGACGTTGGGAATCGTTAAAG 725496 Query 282449 TATGCAGGAACAGTAATAACGGCATC 282474 || || |||||||| || || || || Sbjct 725495 TAGGCGGGAACAGTGATCACTGCCTC 725470 Score = 95.1 bits (104), Expect = 9e-14 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 ||| |||||| ||||| ||||||| || | ||||| || || || |||| ||| Sbjct 850237 AGTGACATCAAAAGTTCCTCCACCCAGGTCGTAGATAAGAACGTT---TTGCTTGT-TTG 850182 Query 282331 GTTTTT----ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 || | | ||| || | || |||| ||||||| ||||||||||| || |||| | Sbjct 850181 GTGTCTTCTCATCGAGCGCGTAAGCAATTCCAGCAGCCGTTGGTTCATTGATTATTCGAA 850122 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 ||| || | |||||||| ||||||| || || ||||| | ||| |||||||| | Sbjct 850121 GAACGTTCAATCCAGCAATCGCAGCTGCATCCTTGGTAGCTTGGCGTTGAGAATCGTTGA 850062 Query 282447 AATATGCAGGAACAGTAATAACGGCATC 282474 | || ||||| || || || || ||||| Sbjct 850061 AGTAGGCAGGTACCGTGATCACTGCATC 850034 >seq84 Length=2481708 Score = 104 bits (114), Expect = 2e-16 Identities = 207/306 (68%), Gaps = 3/306 (1%) Strand=Plus/Minus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| |||||||||||||| | | || | ||| || || || | ||| | ||| Sbjct 2060866 ATCGAAATCTTCACCTCCGAGATGGGTGTCTCCGTTTGTGGCCAGAACCTCGAAGACTCC 2060807 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || || | || | ||| | ||||| ||||| || || | ||| |||| || | Sbjct 2060806 ATTGTCGATAGTGAGAAGCGAGACATCGAAAGTTCCTCCTCCGAGATCGAAAACGAGGAT 2060747 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 ||| | || | ||| || || || ||||| || || | |||||||||||| || || Sbjct 2060746 GTTCTTCTC---GCCTTCCTTCTTGTCCAGACCGTAGGCGATAGCAGCAGCAGTGGGCTC 2060690 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| || || | | || || ||||| ||||| |||| ||||| || || || || | Sbjct 2060689 ATTGATGATGCGAACGACGTTGAGACCGGCAATGGTTCCAGCATCCTTGGTTGCCTGACG 2060630 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 ||| | |||||| || || || || || || | ||||| | | ||||||||||||| Sbjct 2060629 TTGAGCATCGTTGAAGTAGGCGGGGACCGTGACCACGGCGTGCTTGACTTCTTTTCCAAG 2060570 Query 282493 ATAAGC 282498 ||| || Sbjct 2060569 ATAGGC 2060564 >seq77 Length=809317 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 ||||| || |||| |||||| || || |||| ||| | | || || ||||| Sbjct 298359 GTTCCTCCTCCCAGATCAAAGATCAGAACATGGCGTTCCCCATGTCCCTTCTTGTCAAGT 298418 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| |||||||||||| || || || || || | | |||||| || |||||| Sbjct 298419 CCGTAGGCAATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGAACATTGAGTCCAGCA 298478 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || ||| || ||||| || || || | ||| || ||||| ||||| || || || || Sbjct 298479 ATGGCTCCGGCGTCTTTGGTTGCCTGACGTTGAGAGTCGTTGAAATAAGCTGGCACGGTG 298538 Query 282464 ATAACGGCATC 282474 | |||||| || Sbjct 298539 ACAACGGCGTC 298549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740621022707166