Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq81 145 1e-29 seq126 143 5e-29 seq109 143 5e-29 >seq81 Length=934076 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||||||| || || || || ||||| ||||| || ||||| || | | || Sbjct 595334 CGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCA 595275 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| || ||||| | |||||| || ||||| || ||||| ||||| Sbjct 595274 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTG 595215 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||||||| || || || || |||||| || || ||||| | || || Sbjct 595214 TCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATG 595155 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 595154 GTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || | |||||| ||||| || ||||| || || || ||||| Sbjct 596426 CCTCCTCTGAGACGAAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 596367 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | || ||||| || ||||| ||||||||||||||||| || Sbjct 596366 AAGGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCTGGGGGA 596307 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||||||||| || ||||| || || || || ||||| || || Sbjct 596306 ATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTCTCAATAGTGTC 596260 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | || |||||||| || ||||| ||||| || ||||| | | | || Sbjct 595604 CGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCA 595545 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || |||||||| ||||| |||||||| |||||||| || |||||||||||| Sbjct 595544 TCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGGGGAATTCCTTCCTTA 595485 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || ||||| || || || || || || || || Sbjct 595484 TCCTGGATCTTAGCCTTCACGTTCTCGATTGTGTC 595450 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| ||||| || ||||||||||| ||||| ||||| || || ||||||||| Sbjct 594759 CCAGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCT 594700 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || |||||| || || || || | || || ||||| || || | Sbjct 594699 TTGACGTTCTCGATGGTATCAGAAGCCTCGACCTCAAGGGTGATGGTCTTACCGGTTAGG 594640 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 594639 GTTTTGACGAAGATTTGCAT 594620 >seq126 Length=3090016 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| || ||| || || | || || || ||| ||||| || ||||| ||||| Sbjct 1375782 CCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAG 1375723 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| || || || || || ||||| || | || || || ||||| Sbjct 1375722 AGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1375663 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || |||||||| || || || |||||||| || || ||| ||| Sbjct 1375662 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACT 1375603 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| ||||| ||||| || || |||||||| Sbjct 1375602 TCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || ||| |||| || ||||| || || || || || ||||| || | || ||||| || Sbjct 1375451 GAGAGAGTTCTGCCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGG 1375392 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || ||||||||||| || || ||||| || || || ||||| || ||||| || ||| Sbjct 1375391 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCG 1375332 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || ||||| || || | || || || || || ||||| Sbjct 1375331 ACCTCGAGAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 1375282 >seq109 Length=1818587 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||||| || | || || |||||||| || || ||||| || || | Sbjct 529988 TACCTCCGCGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGG 529929 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || ||||| | || || || || ||||| || | ||| ||||| |||| Sbjct 529928 ACAGCGTTCTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAG 529869 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| ||||| || |||||||| || || | ||| | Sbjct 529868 GAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGA 529809 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| |||||||| || || | ||| || || || |||||||| Sbjct 529808 CTTCGAGAGTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| ||||||||||| ||||| || || ||||| || | | ||| Sbjct 529747 ACGAAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACC 529688 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || ||||| || | | || ||||| ||||| ||||||||||| Sbjct 529687 GTCCTCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTT 529628 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || |||||||| || || ||| || || ||||| | || || Sbjct 529627 GTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGAT 529568 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | || || || || || ||||| Sbjct 529567 AGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 529532 Score = 100 bits (110), Expect = 6e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || ||||| || || || || || || || | | | ||| Sbjct 530242 ACGAAGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTCAATGTGCGACC 530183 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || ||||| || || | || ||||| ||||| ||||||||||| Sbjct 530182 GTCCTCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTT 530123 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || |||||||| || || ||| || ||| || || | ||| || Sbjct 530122 GTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCTTCGACCTCTAGAGTAAT 530063 Query 82775 CGTCT 82779 |||| Sbjct 530062 GGTCT 530058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824797284749