Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq164 145 1e-28 seq102 145 1e-28 seq171 143 4e-28 seq64 140 5e-27 seq189 136 6e-26 seq121 136 6e-26 seq126 96.9 5e-14 seq76 87.8 3e-11 >seq164 Length=186736 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | |||||||| | || Sbjct 102722 ATCTACCGTGTTCTGAAGCAGGTCCACCCCGATACCG--GAGTC-TCCTCCAA---GGCC 102775 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||| | |||| ||||| | |||||||| | Sbjct 102776 ATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATTGCTGCCGAGGCCAGC 102835 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 102836 CGTCTTGCCCACTACAACAAGAAGAGCACCATCTCTTCTCGCGAAGTCCAGACCGCTGTC 102895 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| |||||||||||| ||||| |||| Sbjct 102896 CGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 102947 >seq102 Length=1079475 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| || | | | | ||||| || | || Sbjct 708268 ATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACTG--GAGTC-TCCTCGAA---GGCC 708321 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| |||||||||||| | |||| ||||||| | |||||||| | Sbjct 708322 ATGAGCATCATGAACTCCTTTGTCAACGACGTCTTCGAGCGCATCGCCGCCGAGGCCAGC 708381 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 708382 CGTCTTGCCCACTACAACAAGAAGAGCACCATCTCTTCTCGCGAAGTCCAGACCGCTGTC 708441 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || ||||||| |||||||||||| ||||| |||| Sbjct 708442 CGCCTCATCCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCTGAGGGTACCA 708493 >seq171 Length=152934 Score = 143 bits (158), Expect = 4e-28 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | ||||| |||||||||||||| ||||| ||| | | || || |||| |||| Sbjct 37717 CAAGGCGATGTCCATCATGAACTCGTTCGTCAATGACGTCTTTGAGCGAATCGCTGCCGA 37658 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| |||| || || | || ||||||| | || ||| || | ||||| | ||||| Sbjct 37657 GGCCAGTCGTCTCGCCCACTACAACAAGAAGAGTACCATCAGCTCTCGCGAAGTACAGAC 37598 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| || || ||| ||| ||| |||||||||| |||||||||||||||||| |||| Sbjct 37597 CGCCGTCCGTCTCATCCTGCCCGGAGAACTGGCCAAGCACGCCGTCTCCGAGGGAACCA 37539 >seq64 Length=308971 Score = 140 bits (154), Expect = 5e-27 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | |||||||| | || Sbjct 139896 ATCTACCGTGTTCTGAAGCAGGTCCACCCCGATACCG--GAGTC-TCCTCCAA---GGCC 139843 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||| | |||| ||||| | | |||||| | Sbjct 139842 ATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATTGCTGCGGAGGCCAGC 139783 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 139782 CGTCTTGCCCACTACAACAAGAAGAGCACCATCTCTTCTCGCGAAGTCCAGACCGCTGTC 139723 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| |||||||||||| ||||| |||| Sbjct 139722 CGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 139671 Score = 140 bits (154), Expect = 5e-27 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | |||||||| | || Sbjct 142791 ATCTACCGTGTTCTGAAGCAGGTCCACCCCGATACCG--GAGTC-TCCTCCAA---GGCC 142844 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||| | |||| ||||| | | |||||| | Sbjct 142845 ATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATTGCTGCGGAGGCCAGC 142904 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 142905 CGTCTTGCCCACTACAACAAGAAGAGCACCATCTCTTCTCGCGAAGTCCAGACCGCTGTC 142964 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| |||||||||||| ||||| |||| Sbjct 142965 CGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 143016 >seq189 Length=512050 Score = 136 bits (150), Expect = 6e-26 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | || ||||| | | Sbjct 187945 ATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACCG--GAGTC-TCGTCCAA---GGCT 187998 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| |||||||| ||| | |||| ||||||| | |||||||| | Sbjct 187999 ATGAGCATCATGAACTCCTTTGTCAATGACGTCTTCGAGCGCATCGCCGCCGAGGCCAGC 188058 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 188059 CGTCTTGCCCACTACAACAAGAAGAGCACAATCTCTTCTCGCGAAGTCCAGACCGCTGTC 188118 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| |||||||||||| ||||| |||| Sbjct 188119 CGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGTACCA 188170 >seq121 Length=426384 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | || ||||| || || Sbjct 63410 ATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACCG--GAGTC-TCGTCCAA--AG-CC 63357 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||| ||| | |||| ||||||| | |||||||| | Sbjct 63356 ATGAGCATCATGAACTCCTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGAGGCCAGC 63297 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | ||||| |||||||||| || Sbjct 63296 CGTCTTGCCCACTACAACAAGAAAAGCACCATCTCTTCTCGCGAAGTCCAGACCGCAGTC 63237 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| ||| ||| || || |||| |||||||||||| ||||| |||| Sbjct 63236 CGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGTACCA 63185 >seq126 Length=3090016 Score = 96.9 bits (106), Expect = 5e-14 Identities = 174/253 (69%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 1455826 AGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATT 1455885 |||| || |||||| |||| | |||||| | | ||| |||||||||| | | Sbjct 2637858 AGGTGGATCTCGGCAAAGACATGAAGGACTGGGAGGCCATGACCGACGACGAGAGATTCT 2637917 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| | || | ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 2637918 TCATCTCTCGTGTTTTGGCCTTCTT-CGCCGCCTCTGATGGAATCGTCAACGAGAACCTT 2637976 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || || || ||||| ||||| | | ||||| ||||| || ||||| ||||| Sbjct 2637977 GTCGAGCGATTCTCCAAAGAAGTCCAGATATCCGAGGCTCGTTTCTTCTACGGCTTCCAA 2638036 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||||||||||| ||||| || || || | ||| || ||||| ||||| || Sbjct 2638037 ATCGCCATCGAGAACATTCATTCGGAGATGTACAGCAAGCTAATCGAAACCTATATCCGC 2638096 Query 1456066 GACCCGGTCGAGA 1456078 || || ||||||| Sbjct 2638097 GATCCTGTCGAGA 2638109 >seq76 Length=529262 Score = 87.8 bits (96), Expect = 3e-11 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGC 332985 ||||||||||||||||| || ||||| ||| | | |||||| || ||| || | ||| Sbjct 141472 TTGCAGGCCAGGGCAAAGCGAGTCGTCTTGCTGTAAACTTCCATTGTGCGA-CGCATGGC 141530 Query 332986 CTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||| || ||| | ||| | |||||||||||||||||||||| |||||||| || Sbjct 141531 CTGCTGTGCCCCTTCCGTCATCGAGTCGGCCTCGTCGAGGATGATAATCTTGTGTTTTCC 141590 Query 333046 GTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCAC 333105 ||||||| || | || ||| || ||||| | ||||| |||||||| | Sbjct 141591 TGGCGGCAGCGTGACTTTCGTCTGAGCGAAGTTCTTGATTTTGTTGCGGACGACGTCAAT 141650 Query 333106 GCCGC 333110 |||| Sbjct 141651 TCCGC 141655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177792777698942