Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq81 167 3e-36 seq109 156 5e-33 seq126 154 2e-32 seq76 125 8e-24 >seq81 Length=934076 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || || ||||| || ||| | | Sbjct 595120 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACACTTGAAGTCGAGGCTTCT 595179 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || || || |||||||||||||||||||| ||||||||| Sbjct 595180 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 595239 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || || ||||| |||||||||| |||||||| | ||||| ||| Sbjct 595240 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCTGACTACAAT 595299 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| ||||| | || ||||| ||||| Sbjct 595300 ATCCAGAAGGAGTCCACCCTTCACTTAGTCCTCCGACTTCGTGGTGG 595346 Score = 156 bits (172), Expect = 5e-33 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27437 AGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTC 27496 ||||||| ||||| ||||||||| | || | |||| || |||||||||| || | Sbjct 595691 AGACTATCACTCTCGAGGTTGAGGCTTCCGACACTATTGAGAACGTGAAGGCTAAGATCC 595750 Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 |||| |||||||||||||| ||||||||||| | | || || || || ||||| |||| Sbjct 595751 AGGATAAGGAGGGAATTCCCCCAGACCAGCAAAGATTGATCTTCGCCGGAAAGCAGCTCG 595810 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616 |||||| |||||||| | ||||| ||| |||| ||||| ||||| ||||| ||||| Sbjct 595811 AGGATGGACGTACCCTCTCTGACTACAATATCCAGAAGGAGTCCACCCTTCACTTAGTCC 595870 Query 27617 TGCGTCTTCGCGGTGG 27632 | || ||||| ||||| Sbjct 595871 TCCGACTTCGTGGTGG 595886 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || || || |||||||| || || ||||| || || | Sbjct 594891 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTC 594950 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || |||||||| ||||||||||| |||||||| Sbjct 594951 GGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 595010 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || || ||| | ||||||| || || | | ||||| || Sbjct 595011 GCAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAA 595070 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| ||||| | ||| | || ||||| ||||| Sbjct 595071 CATTCAGAAGGAATCCACCCTTCACTTGGTCCTCCGACTTCGTGGTGG 595118 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || ||||| || |||||||| || || | Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||| || ||||| || ||||||||| Sbjct 596761 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 596820 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || || ||| | ||||||| || || | | ||||| || Sbjct 596821 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 596880 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| ||||| || |||| ||||| || ||| Sbjct 596881 ATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGACTTCGTGGAGGA 596928 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27437 AGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTC 27496 |||| || |||||||| || || | || | || | ||| | ||||| || || | Sbjct 595961 AGACCATCACTCTTGAAGTCGAAGCCTCGGACACAATCGAGAATGTCAAGGCCAAGATCC 596020 Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 ||||||| |||||||| || |||||||||||| | || || || ||||| ||||| |||| Sbjct 596021 AGGACAAAGAGGGAATCCCCCCAGACCAGCAGAGACTCATCTTCGCTGGAAAGCAGCTCG 596080 Query 27557 AGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616 |||||| || ||| | | ||||| ||| |||| ||||| || ||||| ||||| || Sbjct 596081 AGGATGGCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCTACTCTCCATCTTGTTC 596140 Query 27617 TGCGTCTTCGCGGTGGA 27633 |||| ||||| || ||| Sbjct 596141 TGCGACTTCGTGGAGGA 596157 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||| | | Sbjct 594620 ATGCAAATCTTCGTCAAAACCCTAACCGGTAAGACCATCACCCTTGAGGTCGAGGCTTCT 594679 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || || || |||||||||||||||||||||||||| ||| Sbjct 594680 GATACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 594739 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| | || || || |||||| || || Sbjct 594740 CAGAGACTTATCTTCGCTGGTGAGTAA 594766 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| ||||| || ||||| | | | || |||||| | Sbjct 596928 AATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCCTCATCCCGGATGTTGAGGCTTC 596987 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | | | || ||||||| || || |||| ||||||||||||| || | Sbjct 596988 TGACACCGTCATGAACCTGAAGGCCAAGATCTTCGACATGGAGGGAATTCCTTTTGATGA 597047 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || ||||| || ||||| | || |||||||||||||| | || || || Sbjct 597048 ACAGCGTCTGATCTTTGCCGGAAAGCAGTTGGAAGATGATCGTACCCTGTCTGAGTACAA 597107 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || || ||||| | ||| | ||||| Sbjct 597108 CATCCAGAAGGAGTCTACCCTTCACGTGGTCCTTCGTCT 597146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || || || |||||||| || || ||||| || || | Sbjct 596427 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCTTC 596486 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || |||||||| ||||||||||| |||||||| Sbjct 596487 GGACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGACCA 596546 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | || || || |||||| || Sbjct 596547 GCAGAGACTCATCTTCGCTGGTGAG 596571 >seq109 Length=1818587 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || ||||| || ||||| || || || || ||| | | Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || || |||||||| ||||| ||||| || ||| Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | |||||||| || ||||| |||||||| | ||| || || ||| || || || Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGC-GATTACAA 529710 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || | ||| | ||||| || ||||| Sbjct 529711 CATCCAGAAGGAATCTACTCTCCACTTGGTCCTTCGTCTCCGTGGTGG 529758 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||||| || || ||||| |||||||| || || || | Sbjct 529760 ATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTCC 529819 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || ||||| || ||||||||||| ||||||||||| || ||| Sbjct 529820 GACACTATTGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 529879 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| | || |||| | || || | ||||| ||| Sbjct 529880 CAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAAT 529939 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || || ||||| ||| |||| |||||||| || Sbjct 529940 ATCCAAAAGGAATCTACGCTCCATCTCGTCCTGCGACTTCGCGGAGG 529986 Score = 132 bits (146), Expect = 5e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 27437 AGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTC 27496 |||| |||||||| ||||| || | ||| | || | |||| | ||||| || || | Sbjct 530058 AGACCATTACTCTAGAGGTCGAAGCTTCTGACACTATCGAAAATGTCAAGGCCAAGATCC 530117 Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 | |||||||| ||||| ||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 530118 AAGACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTCG 530177 Query 27557 AGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||| | ||| || | ||| ||||| || |||||||||| || || || || | ||| Sbjct 530178 AGGACGGTCGCACATTGAGC-GACTACAACATCCAAAAGGAGTCTACCCTCCACTTGGTC 530236 Query 27616 TTGCGTCTTCGCGGTGG 27632 | ||||| || ||||| Sbjct 530237 CTTCGTCTCCGTGGTGG 530253 >seq126 Length=3090016 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || || || || || || | Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || ||||||||||| ||||||||||| |||||| Sbjct 1375616 GACACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 1375675 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| ||||| |||| |||||| || | |||||||| Sbjct 1375676 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAAC 1375735 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||| ||| || ||||| ||| | ||||| || || ||| Sbjct 1375736 ATCCAGAAGGAAAGCACACTCCATCTCGTCCTTCGTCTGCGAGGAGGA 1375783 Score = 152 bits (168), Expect = 6e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || || || ||||| || || || ||||| ||| | Sbjct 1376096 AATGCAAATTTTCGTCAAGACTCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 1376155 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | || || || || ||||||||||| || || || || ||||| Sbjct 1376156 CGACACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 1376215 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || || |||| |||||| || | ||||| || Sbjct 1376216 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGTACTCTCTCCGACTACAA 1376275 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || ||||||||| | ||| |||||||||| || ||| Sbjct 1376276 CATCCAGAAGGAGTCTACTCTTCATTTGGTCCTGCGTCTTCGTGGAGGA 1376324 Score = 125 bits (138), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || ||||| ||||| || ||||| ||||| || | Sbjct 1375282 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACCATCACTCTCGAGGTCGAAGCTTCC 1375341 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || ||||||||||| |||||||| || || ||| Sbjct 1375342 GATACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 1375401 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||||||| || || || || ||||| ||||| |||| Sbjct 1375402 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATG 1375438 >seq76 Length=529262 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| |||||||| || || ||||| ||| | | Sbjct 256008 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAGACTATCACCCTCGAGGTCGAGGCCTCT 255949 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||| || || ||||| |||||||||||||| || |||||| Sbjct 255948 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCTGACCAG 255889 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 255888 CAGCGTTTGATCTTCGCCGGTA 255867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309038383920