Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq109 122 6e-23 seq81 114 9e-21 seq126 91.5 1e-13 >seq109 Length=1818587 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| |||||||| ||||| |||||||| || | | Sbjct 529532 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCCTCGAAGTCGAGGCTTCT 529591 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || ||||| ||||| | || || ||||| Sbjct 529592 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 529651 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||||||||| || || || |||| ||||| | ||||||||||| Sbjct 529652 CAGCGTTTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACACTGAGCGATTACAAC 529711 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 529712 ATCCAGAAGGAATCTAC 529728 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || || ||||| ||||||||||| || || | Sbjct 529760 ATGCAGATCTTCGTGAAAACGCTCACTGGGAAGACGATTACTCTCGAAGTCGAAGCCTCC 529819 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | ||| || || ||||| ||||| | || || ||||| Sbjct 529820 GACACTATTGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 529879 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || ||||| || ||||||| | | | || | ||| ||||| Sbjct 529880 CAACGTCTGATCTTCGCAGGCAAGCAGTTGGAAGATGGAAGAACGCTGTCCGACTACAAT 529939 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 529940 ATCCAAAAGGAATCTAC 529956 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || ||||| |||||| | || ||||||||||| || || || Sbjct 530120 GACAAGGAAGGAATCCCTCCCGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTCGAG 530179 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 |||| ||||| || |||| |||||||| ||||| ||||| || Sbjct 530180 GACGGTCGCACATTGAGCGACTACAACATCCAAAAGGAGTCTAC 530223 >seq81 Length=934076 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || ||||| || |||||||| ||||| || || || Sbjct 596701 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTCGAAGCCTCG 596760 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || ||||| || Sbjct 596761 GACACAATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 596820 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||||||| |||| || | |||||||| ||| |||||| Sbjct 596821 CAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACAAC 596880 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | ||| | ||| | | | || |||||| Sbjct 596881 ATTCAGAAGGAGTCTACTCTCCATCTTGTTCTGCGACTTCGTGGAGGA 596928 Score = 113 bits (124), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| ||||||||||| || || || ||||| || ||||| || || | Sbjct 594891 AATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAAGTCGAAGCCTC 594950 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || | | |||||||| || | || ||||| | Sbjct 594951 GGACACAATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAAGAGGGAATTCCCCCAGACC 595009 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || |||||||||||| |||| || | |||||||| ||| |||| Sbjct 595010 AGCAGAGACTCATCTTCGCCGGCAAACAATTGGAGGATGGCCGCACTTTGTCCGACTACA 595069 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || ||||| Sbjct 595070 ACATTCAGAAGGAATCCAC 595088 >seq126 Length=3090016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | ||||| ||||| ||||| |||||||| || | || Sbjct 1375556 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCG 1375615 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||| ||||| | || || || || Sbjct 1375616 GACACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 1375675 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || ||||| | || ||| | || || ||| Sbjct 1375676 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTCTCTCTGACTATAAC 1375735 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || |||| | ||| | || | | ||||||||||| Sbjct 1375736 ATCCAGAAGGAAAGCACACTCCATCTCGTCCTTCGTCTGCGAGGAGGA 1375783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008813177028