Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq109 168 2e-36 seq126 159 8e-34 seq81 147 5e-30 >seq109 Length=1818587 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| |||||| || ||||| || ||||| ||||||| |||||| |||| || ||| Sbjct 529980 CGAAGTCGCAGGACGAGATGGAGCGTAGATTCCTTTTGGATATTGTAGTCGGACAGCGTT 529921 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | |||||| || |||||||| || ||||| || ||||| ||||| ||| Sbjct 529920 CTTCCATCTTCCAACTGCTTGCCTGCGAAGATCAGACGTTGCTGATCGGGAGGAATTCCT 529861 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| || || ||| || ||||| |||| ||| || || | Sbjct 529860 TCCTTGTCCTGGATCTTAGCTTTGACGTTTTCAATAGTGTCGGAGGCTTCGACTTCGAGA 529801 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||||| | ||| | ||||| Sbjct 529800 GTAATCGTCTTCCCAGTGAGCGTTTTCACGAAGATCTGCAT 529760 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||| ||||| || |||| ||||||||| || || | || || Sbjct 529743 AGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGACCGTCC 529684 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || | || || || ||||| || || |||||||||||| Sbjct 529683 TCGAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCT 529624 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||| ||||| || | || || || | ||||| || Sbjct 529623 TGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCCTCGACTTCGAGGGTGATAGTT 529564 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | |||||| | ||| | |||||| Sbjct 529563 TTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 529532 Score = 120 bits (132), Expect = 7e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || ||||||| ||||| ||| ||| || | || || Sbjct 530238 AGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTCAATGTGCGACCGTCC 530179 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || || || || || ||||| || || |||||||||||| Sbjct 530178 TCGAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCT 530119 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||| ||||| || | ||| || |||| || || ||| Sbjct 530118 TGGATCTTGGCCTTGACATTTTCGATAGTGTCAGAAGCTTCGACCTCTAGAGTAATGGTC 530059 Query 225682 T 225682 | Sbjct 530058 T 530058 >seq126 Length=3090016 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| | || ||||| || || || |||| ||||| |||| | ||| Sbjct 1376318 ACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1376259 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| || ||||||||||| || || ||||| ||||| || || Sbjct 1376258 ACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCC 1376199 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| || || ||||| ||||| || | ||||| || | Sbjct 1376198 TTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCACCTCGAG 1376139 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| ||||||| ||| || | ||| | ||||||| Sbjct 1376138 GGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCATT 1376096 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| ||| ||| || |||| || || || | | ||| | |||||| Sbjct 1375767 AGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAGAGAGTACGACCATCT 1375708 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 1375707 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 1375648 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || || ||||| || | ||| || || | ||||| || Sbjct 1375647 TGGATCTTTGCCTTGACGTTCTCAATCGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTT 1375588 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| | ||||| Sbjct 1375587 TTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 Score = 127 bits (140), Expect = 5e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 |||||| |||||||| |||||||| || |||||||| || || || || || || ||||| Sbjct 1375446 AGTTCTGCCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAAT 1375387 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||||||||| |||||||| ||| || ||||||||| || || | ||| || || Sbjct 1375386 TCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTATCGGAAGCTTCGACCTC 1375327 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| ||||| || || | |||||| | ||| | |||||| Sbjct 1375326 GAGAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 1375282 >seq81 Length=934076 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| ||||| |||||||| || || || |||| |||||| || | ||| || Sbjct 595611 ACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAAGGT 595552 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| |||| ||| || || || ||||| || Sbjct 595551 GCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGGGGAATTCC 595492 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| |||||| ||||| ||||| |||| || || || | Sbjct 595491 TTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATTGTGTCCGAGGCCTCAACCTCGAG 595432 Query 225672 CGTGATCGTCT 225682 ||||| |||| Sbjct 595431 AGTGATAGTCT 595421 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| ||||| |||||||| || || || |||| |||||| || | ||| || Sbjct 596151 ACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAAGGT 596092 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| |||| || ||||| || || || || Sbjct 596091 GCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCTGGGGGGATTCC 596032 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||||| ||| ||| ||||| ||||| |||| ||| || || | Sbjct 596031 CTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGCTTCGACTTCAAG 595972 Query 225672 CGTGATCGTCT 225682 ||||| |||| Sbjct 595971 AGTGATGGTCT 595961 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||||| | ||| || ||||| || || |||| |||||| || | | || Sbjct 595341 ACGAAGTCGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGT 595282 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || ||| ||||| || ||||| || Sbjct 595281 ACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCC 595222 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||| || || |||||||| || || | || || || | Sbjct 595221 CTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAG 595162 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||||||||| || | ||| | ||||| Sbjct 595161 TGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 595120 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| |||| || ||||| || ||||| || || ||||| |||||||| | Sbjct 596567 CCAGCGAAGATGAGTCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTGGCC 596508 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||| ||||| || | ||| || || | ||||| |||||||| || | Sbjct 596507 TTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTCTTGCCAGTGAGG 596448 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | |||||| Sbjct 596447 GTTTTCACGAAGATCTGCATT 596427 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||||| || || || || ||||| || |||||||| ||||||||| Sbjct 594759 CCAGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCT 594700 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||| || || | || || || | ||||| ||||| || || | Sbjct 594699 TTGACGTTCTCGATGGTATCAGAAGCCTCGACCTCAAGGGTGATGGTCTTACCGGTTAGG 594640 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 594639 GTTTTGACGAAGATTTGCAT 594620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528281652554