Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq109 149 9e-31 >seq109 Length=1818587 Score = 149 bits (164), Expect = 9e-31 Identities = 232/332 (70%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 || || | ||| || ||| || ||||| |||||||| ||| ||||| || || ||| Sbjct 200488 TCGTACTTAGTGTAAAGCTTCTCGAATTCTTCTCCCCAGCAATCGTCCAAACCGGGACAT 200429 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 ||| || ||||||| |||||||| ||||| | |||| ||||| || |||||| Sbjct 200428 TCACGAGGACACATCAGCGACCAGTCGGTATCTTGTTCGACTCTCTTCATGAAAAGATCA 200369 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083 || ||||| ||||| | ||| ||||| || | | | ||||| || || |||||| Sbjct 200368 GGGATCCACAGAGCCAGAAAGAGATCACGAGCACGCTCCTCTTCGGGACCAGTGTTCTTT 200309 Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 | ||| | || || | ||||| | ||||| || || || || || || | | || Sbjct 200308 CTCAGAGAGCAGAATTCAAAGATATCTGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCT 200249 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 ||||| || ||||| |||||||| || | || | || || || || || || | | | Sbjct 200248 CCAGGACGCTTATTTCCTCCCTGGTCGACGTAACGAGCAGTATTGTTGTATACCCGGAGC 200189 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGT 78235 || ||||| | ||||| |||||||||||||| Sbjct 200188 ATGGGAATGAGTCCGTTCGATGTTCCATTTGT 200157 Score = 125 bits (138), Expect = 1e-23 Identities = 334/504 (66%), Gaps = 6/504 (1%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||| || || || ||||| || ||||| |||| || | |||| |||| || || Sbjct 201370 AGAAGATGTGGGTTTACAATTTGGAAGTCTCCCGACAGCACACGACGACTGTATATGTTC 201311 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||| || || || | || || |||||||| | |||||||||||| || ||||| ||| Sbjct 201310 GAGGTGTAGGGCTCAATGGACTCGTTGTTTCCAAGAATTTGAGCAGTCGAGGCAGTGGGC 201251 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC-TGATTTTATCTTTTAGATA 77284 ||||| |||| || | ||| || | || |||| | ||| |||| || || ||| Sbjct 201250 ATAGGAGCCATCAGCAGACTGTTACGGATTCCAT-TCTTCTTGATCTTCTCGCGAAGAGT 201192 Query 77285 TTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT 77344 ||| || || | | | ||| ||| |||| | |||| |||| || ||||| || Sbjct 201191 GAGCCAGTCGCATTGGCCAGGCGGTGTAACTCCCCACATATCGAATTGCAGGATTCC-TT 201133 Query 77345 ACTAGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAA 77402 || | || || | || || || || || || | || || ||||||||| Sbjct 201132 TGGAG-ACCGGACTGCCCTCGTACGTCTCGTAGGGACCGAGTTGCTCGGCCAGTTCACAA 201074 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 || |||| ||||||| ||| || || ||||| || ||| || | |||| | ||| Sbjct 201073 GATGCCTCCAGAGCTCCGTGATAGATCGTCTCGAAGATTCGCTTGTTCAAATCTCGGGCT 201014 Query 77463 TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCA 77522 || | || || || | | | || || ||||| || | ||||| ||||| Sbjct 201013 TCGGGAGAATTGAAGTTGTAGCGCATCAACATGAAAGCATCGGCAAGGCCCTGTACTCCC 200954 Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 | || || || | ||| | | || ||| | ||||| |||| |||||||||||| Sbjct 200953 AGTCCGATGGGACGATGACGTATGTTTGAATTACGGGCTTCCGGAACCGGATAATAATTA 200894 Query 77583 ATGTCTATAATTTTATTGAGATTT 77606 ||||| || || || || |||||| Sbjct 200893 ATGTCGATGATCTTGTTCAGATTT 200870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667141478240