Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq126 138 1e-27 seq81 105 6e-18 seq109 82.4 7e-11 >seq126 Length=3090016 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||||||||| ||||| ||||||||| Sbjct 1376323 CCTCCACGAAGACGCAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1376264 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| || || ||||| ||||| | || Sbjct 1376263 AGAGTACGACCATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGCGGG 1376204 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || |||| ||| | | |||||| | |||||| Sbjct 1376203 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTGACGTTCTCGATCGTGTCGGAAGCCTCCAC 1376145 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||||||||| ||||| |||||||| ||||| Sbjct 1376144 CTCGAGGGTGATGGTCTTACCCGTCAGAGTCTTGACGAAAATTTGCAT 1376097 Score = 136 bits (150), Expect = 4e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 1375782 CCTCCTCGCAGACGAAGGACGAGATGGAGTGTGCTTTCCTTCTGGATGTTATAGTCAGAG 1375723 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||||||||| || || ||||| ||||||| ||| Sbjct 1375722 AGAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1375663 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | ||||||||| ||| ||| ||| |||| | || ||||| | || Sbjct 1375662 ATTCCTTCCTTGTCCTGGATCTTTGCCTT----GACGTTCTCAATCGTGTCCGAAGCTTC 1375607 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 1375606 GACTTCGAGGGTGATGGTTTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1375556 >seq81 Length=934076 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||| ||||||||| || || ||||| |||||||| || | || ||||||||| Sbjct 595322 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGC 595263 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || |||||||| |||| | || ||||| | ||||| | |||||||||| || | || Sbjct 595262 TTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCC-TGGATCTT 595204 Query 41780 TGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| ||| | | || || | ||| || || | || || || || ||||| Sbjct 595203 TGCTTTGACGTTCTCGATGGTATCAGAAGCCTCGACTTCAAGTGTGATGGTCTTTCCCGT 595144 Query 41839 CAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||||||| Sbjct 595143 CAAAGTCTTGACGAAGATCTGCATG 595119 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||| ||||||||| || || ||||| |||||||| || | || ||||||||| Sbjct 595862 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGTCCATCCTCGAGCTGC 595803 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || |||||||| |||| | || ||||| | ||||| | |||||| ||| ||| || Sbjct 595802 TTTCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTA 595743 Query 41780 TGCTTCA 41786 ||||| Sbjct 595742 GCCTTCA 595736 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || ||||||||||||||| |||||||| Sbjct 596927 CCTCCACGAAGTCGCAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 596868 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | || ||||||||||| || || | ||| ||||| | ||| Sbjct 596867 AAAGTGCGGCCATCCTCCAATTGTTTGCCGGCGAAGATGAGTCTCTGCTGGTCTGGGGGG 596808 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || |||||| ||| || ||||| | | ||||| | || || Sbjct 596807 ATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATTGTGTCCGAGGCTTCGACT 596748 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || ||||| ||||| ||||||||| Sbjct 596747 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCATG 596700 >seq109 Length=1818587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||| || ||||| |||||| | Sbjct 530523 CCTCCACGAAGACGCAGGACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGCTG 530464 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || || || | ||| || || | ||| Sbjct 530463 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCGGGAGGA 530404 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || || |||||| ||| || Sbjct 530403 ATGCCTTCTTTGTCCTGGATCTT 530381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302896249200