Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq97 178 2e-39 >seq97 Length=72787 Score = 178 bits (196), Expect = 2e-39 Identities = 628/970 (65%), Gaps = 27/970 (3%) Strand=Plus/Minus Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 || || || || |||||||| || | ||| | ||| || || ||||||| || || | Sbjct 70106 CCCTGGACGCCGATACCGATGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGGACG 70047 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG---ACAATTACTTTGACCACA 53653 || ||||| || || || || || || || | ||| || ||| | ||| | ||| Sbjct 70046 GGGTAATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGGTGACAGT--CTTCGTG-ACA 69990 Query 53654 TCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT-------ACAAACATGTTCAATGC 53706 |||||| ||| ||||| |||| || | || || || |||||| || Sbjct 69989 GCCTTCAACTTGTTGAAATCGAATT---CA-CGGTTGGGGCCGACGAAGCGGTTCAACGC 69934 Query 53707 AATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGT 53766 || || |||||||| || ||||| ||||||| || | |||| | || || || Sbjct 69933 GATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCGGT 69874 Query 53767 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 53826 ||| || || || || ||||| ||||| | || || || || ||||| ||| || || Sbjct 69873 GCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGC 69814 Query 53827 ATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || || ||||| ||| | || || |||||||| | || | || || ||||| Sbjct 69813 GTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGATGTGCTTCCA 69754 Query 53887 GACGACACGAGCCTTTATTATAGATTT--GTATCTCTTTTCTCTTTCGTATAGTGTATAC 53944 || | |||||||| || | ||| | | | ||| || |||||| || || Sbjct 69753 GAGATCGCGAGCCTTGATCT--GCTTTCGGAAACGCTTCTCCGACTCGTATTTCGTGTAG 69696 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 | || |||| || ||||| | || | || || || || | || |||||| Sbjct 69695 AGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCACTCGTGGGGGCACATC 69636 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 | ||||| ||||| | ||| || ||||| || ||||| || ||||| ||||| Sbjct 69635 AGAGACCAGGTGCCGTCGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCCAGAGAGC- 69577 Query 54065 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 ||| || ||||| | || | | |||||| || |||||| || | ||| | || Sbjct 69576 ATAGAAGAGATCACGGGCACGCTCTTCCTCAGCACCACGATTCTTCTTCATATCCATGAC 69517 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | | || || | ||||||||||| | ||| |||| | | | ||||| || ||||| Sbjct 69516 CTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCAGGACGCTTGTT 69457 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| |||||||| | ||| | ||| ||||| || | || | | ||| || | || || Sbjct 69456 TCCGCCCTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCC 69397 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATT 54301 |||||| | || ||| || | || | | |||| ||||||| || || | ||| Sbjct 69396 ATTGGAGACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATT 69337 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 | || || || || || || || ||||| ||||||| | || || || || | Sbjct 69336 G--AGCCCAATGCCGCCGGCTGACTTTGAGATCTTTGCGCATTGCTTCAATGTGTCGAAA 69279 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 ||||| || || || |||||| ||| | || | || ||| ||||| || | ||| Sbjct 69278 ATGCCATCGATGCTGTCATCCGACATAGTTAGCAAGAAGCAGGACGACATCTGAGGCCGA 69219 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 || |||||||| || | || || | || || || ||||| || || | ||| Sbjct 69218 GGGGTACCCGCATTGAACAGAGTGGGCGTGGCATGGGTGAACCAGCGCTCGGACATGAGA 69159 Query 54482 TTGTACGTCT 54491 ||||| |||| Sbjct 69158 TTGTAGGTCT 69149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714623771200