Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq806 114 1e-20 seq464 91.5 2e-13 seq896 87.8 2e-12 seq295 87.8 2e-12 seq940 86.0 7e-12 seq348 86.0 7e-12 seq882 84.2 3e-11 seq859 84.2 3e-11 seq838 84.2 3e-11 seq581 84.2 3e-11 seq394 84.2 3e-11 >seq806 Length=689343 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | ||||| || | || || |||||||| || ||||| Sbjct 392672 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 392731 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||||||| ||| || |||| || Sbjct 392732 ATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 392791 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| ||| || |||| |||||||| ||||| || || ||||| ||| Sbjct 392792 TCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACA 392851 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 392852 AAGATCTGCAT 392862 >seq464 Length=41314 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTC-GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| ||| ||||||||||||| |||||| | ||||||||||| ||| Sbjct 41002 AAAAATTTTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATA 40943 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||||||| || Sbjct 40942 CTTACCACTATACTACCGAAGA 40921 >seq896 Length=14559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTC-GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| || ||| ||| ||||||||||||| |||||| | ||||||||||| ||| Sbjct 10007 AAAAATTGTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATA 10066 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||||||| ||| Sbjct 10067 CTTACCACTATACTACCGAAGAT 10089 >seq295 Length=12470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || ||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 10113 AAAAAATTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 10172 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 10173 TTACCACTATACTACCGAAGA 10193 >seq940 Length=486050 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | ||||||||||||| |||||| | ||||||||||| |||| Sbjct 337514 AAAAAATTTCTCTCCGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 337573 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||| ||| Sbjct 337574 TTACCACTATACTAACGAAGAT 337595 >seq348 Length=454676 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 60049 CGTTTATGAAAAA--TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG 60106 |||| | |||||| | | ||| |||| ||||||||||||| |||||| | |||||||| Sbjct 120770 CGTTCAGGAAAAAAGTATCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAG 120829 Query 60107 GCGGACATACTCACCACTATACTACCGAGGA 60137 ||| ||||| |||||||||||||||| || Sbjct 120830 GCGCGGATACTTACCACTATACTACCGAAGA 120860 >seq882 Length=429281 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || ||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 420932 AAAAGATTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 420873 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 420872 TTACCACTATACTACCGAAGA 420852 >seq859 Length=238021 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| ||| || | ||||||||||||| |||||| | ||||||||||| |||| Sbjct 201152 AAAAATTTCCTCTCCGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 201211 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| ||| || Sbjct 201212 TTACCACTATACTAACGAAGA 201232 >seq838 Length=218731 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| | || ||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 189937 AAAGAATTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 189878 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 189877 TTACCACTATACTACCGAAGA 189857 >seq581 Length=9631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || ||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 2678 AAAAATGATTCCTCTCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 2619 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||||||| || Sbjct 2618 ACTTACCACTATACTACCGAAGA 2596 >seq394 Length=505719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || || || || | || || |||||||| || ||||| Sbjct 8556 TCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 8615 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || |||||||| | || | || |||||||| ||| || |||| | Sbjct 8616 ATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 8675 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| ||| || |||| || || || ||||| || || ||||| || Sbjct 8676 TCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACG 8735 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 8736 AAGATTTGCAT 8746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || | |||||| |||||||| Sbjct 9012 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAG 9071 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | | ||||| ||| ||| || |||| || Sbjct 9072 ATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 9131 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| ||| || || | |||||||| ||||| || || ||||| || Sbjct 9132 TCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 9191 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 9192 AAGATCTGCAT 9202 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 9962 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 10021 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | |||||||| || | || | || ||||| ||| | Sbjct 10022 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGG 10081 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | |||||| || || |||| |||||||| || Sbjct 10082 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTCTTT 10141 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||||| || ||||| || ||||||||||| ||||| Sbjct 10142 CCCGTCAGGGTCTTGACGAAGATTTGCATGATTACG 10177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810881143200