Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq806 116 2e-21 seq394 107 1e-18 >seq806 Length=689343 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || |||| | || || | |||||| || ||||| Sbjct 392671 TTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCGAA 392730 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 392731 GATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 392790 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||| || || | |||||||| ||||| ||||| || ||||| Sbjct 392791 CTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 392850 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 392851 AAAGATCTGCAT 392862 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||||| || || |||| ||| | ||| ||| ||||| |||||||||||||| Sbjct 392180 CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAG 392239 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| |||||||| || ||| Sbjct 392240 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 392299 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | || | || || Sbjct 392300 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACT 392359 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || ||||| || || || || ||||||||||| Sbjct 392360 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 392406 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || |||| | || || | |||||| || ||||| Sbjct 391987 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAA 392046 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||| ||||| ||| | || ||||| || |||||| ||| | | Sbjct 392047 GATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTGACGTT 392106 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | ||| || || | ||||| || ||||| || | ||||||||| Sbjct 392107 CTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTCAC 392166 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 392167 GAAGATCTGCAT 392178 >seq394 Length=505719 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||| ||| | || ||| ||||| ||||||||||||||| Sbjct 8976 CCACCGCGCAGGCGGAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 9035 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||||||||| || ||||| || | ||||||||||| ||| Sbjct 9036 AAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 9095 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | || | ||| | |||||| Sbjct 9096 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACC 9155 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 9156 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| ||| || |||| ||| | ||| ||| || || ||||||||||||||| Sbjct 8748 CCACCACGCAACCTGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 8807 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| || | ||||||||| ||||||||||| || |||||||| ||| Sbjct 8808 AAAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGG 8867 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | |||| || || Sbjct 8868 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACT 8927 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || | || || |||||||||||||| Sbjct 8928 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| |||| ||||| ||| | || ||| ||||| ||||||||||||||| Sbjct 9432 CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 9491 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| ||||| ||||| || ||||| || ||| Sbjct 9492 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 9551 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | || | ||| | |||||| Sbjct 9552 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACT 9611 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||||||||| || || || ||||||||||| Sbjct 9612 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | ||| ||| || || |||||||||||| Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || || |||||||| ||| Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGA 8639 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | |||||| Sbjct 8640 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACT 8699 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || ||||| ||||| Sbjct 8700 TCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068298806400