Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq806 91.5 1e-13 seq394 87.8 2e-12 >seq806 Length=689343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | ||||| || || || ||| |||| || ||| || Sbjct 392635 CATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAG 392576 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | |||| || |||| || ||| | || |||||| | || ||||| Sbjct 392575 CGACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCA 392516 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||| | || | || ||||| || || || ||| | || ||| |||||||| Sbjct 392515 GCAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAA 392456 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| || | || || || || || | ||| | ||||| || Sbjct 392455 CATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGACTTCGCGGTGG 392408 >seq394 Length=505719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || ||| | |||||||| ||||| ||| |||| |||||| ||| Sbjct 8746 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACGATTACCCTCGAAGTCGAAGGCAGC 8687 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| || || | || |||||| | || |||||| Sbjct 8686 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 8627 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || ||||| || || |||||| | || | | ||| |||| | Sbjct 8626 CAACGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCAGCGACTACAAC 8567 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAAT 25067 || || || || | || |||||| | || | || ||||||| ||| | | ||| Sbjct 8566 ATCCAAAAGGAATCTACCCTTCATCTCGTCCTTCGTCTGCGCGGTGGTAACTAAAT 8511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418299207804800