Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq394 107 2e-18 seq97 104 2e-17 seq806 100 3e-16 seq793 87.8 2e-12 seq585 86.0 6e-12 >seq394 Length=505719 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| || ||||| ||||| || ||||| | |||| ||||| ||||| Sbjct 8544 TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTGC 8603 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| ||||||||||| || || || |||||||| ||||| ||| || Sbjct 8604 TTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 8663 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | |||||| || || || || | ||| | |||||||||||| Sbjct 8664 GCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGTG 8723 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || ||||| ||||||||| Sbjct 8724 AGGGTCTTGACGAAGATTTGCATA 8747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||||| || ||||| ||||| || ||| || || | ||||||| Sbjct 8766 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCG 8825 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || | || ||||||||||| || || || || ||||| ||||| | Sbjct 8826 AGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 8885 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | ||| | ||||||| ||| || |||| ||| | |||||| Sbjct 8886 ATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTG 8945 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || || || || || ||||| Sbjct 8946 CCAGTCAAGGTCTTGACAAAGATCTGCAT 8974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || || | ||| || ||||| | || || || || || ||||| || ||| Sbjct 9431 GCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 9490 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || |||||||| || || || |||| |||||||||||||| || || Sbjct 9491 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 9550 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || || | | || | |||||| || || || Sbjct 9551 GATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGAC 9610 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||| | || || ||||| || ||||| Sbjct 9611 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||||| | |||| ||||| ||||| || || Sbjct 9234 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 9293 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||| || || || |||||||| ||||| ||| || || Sbjct 9294 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9353 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | || || || | || | |||||||| ||||| || Sbjct 9354 ACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTC 9413 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9414 TTGACGAAGATCTGCAT 9430 >seq97 Length=72787 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 || |||||||||| ||||| ||||| || || ||||||| |||| || ||||| Sbjct 69935 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCG 69876 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | |||| ||||||||||| ||| ||| || || ||||| || ||||| || Sbjct 69875 GTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAG 69816 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGA 153794 ||||| ||||| |||||||| || ||||| |||||| ||||| Sbjct 69815 GCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGA 69774 >seq806 Length=689343 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| ||||| | ||||| || || || ||||| |||||||| Sbjct 392407 GCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCT 392466 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| || |||||||| || || || |||| ||||||||||| || ||||| Sbjct 392467 CAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGG 392526 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | || | | ||| | |||||| || || | Sbjct 392527 GATGCCTTCCTTATC-TTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAA 392585 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||| | ||||| ||||| | || || || || || ||||| Sbjct 392586 CTTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||| ||||| |||||||| ||||| |||||||| ||||| ||| || Sbjct 393006 TTACCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTG 393065 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| | | || ||||||| ||| | ||||||||||| Sbjct 393066 GCCTTGACATTTTCAATGGTGTCTGAGCCTTCAACCTCAAGGGTGATGGTCTTGCCGGTA 393125 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 393126 AGAGTCTTGACGAAGATCTGCAT 393148 >seq793 Length=17056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||| |||||||||||| || || |||||||| || || ||| || Sbjct 5318 TTACCAGCGAAGATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTTG 5377 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| | || ||| ||||||| ||| | ||||||||||| Sbjct 5378 GCCTTGACATTTTCGATGGTGTCAGAGGCCTCAACCTCAAGGGTGATGGTCTTGCCGGTG 5437 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 5438 AGGGTCTTGACGAAGATCTGCAT 5460 >seq585 Length=222271 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 || |||||||||| ||||| ||||| || || || |||| |||| || || || Sbjct 92013 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCG 92072 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | |||| ||||| ||||| ||| ||| || ||| ||||| || ||||| || Sbjct 92073 GTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAG 92132 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGA 153794 || || ||||| | |||||| || ||||||||||| ||||| Sbjct 92133 GCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGA 92174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058171248000