Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq97 187 4e-42 seq585 134 2e-26 >seq97 Length=72787 Score = 187 bits (206), Expect = 4e-42 Identities = 1018/1607 (63%), Gaps = 38/1607 (2%) Strand=Plus/Minus Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879 || ||||| || | | ||| | ||||| ||||| ||||| |||||||| || | Sbjct 70736 TAGCTCGGCTCCGGAAGATGCAAATTCAACGATTGCGACTGATCAATGAAGGCGCCACGA 70677 Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCG 78938 || || ||||| | ||||| ||| || |||||||| | || || || | ||| Sbjct 70676 TCGGCGGCCATCTGGATGATGTCCTTCTGACTGATTTCCCAGACGGTCTTGTAGATCTC- 70618 Query 78939 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCT 78995 ||| | || || || | | | | || |||| ||| |||| | || | | Sbjct 70617 CTTGACGTCATCCGGGATGCCGGGGATGTTTTGAACGGAGCCACTGCCAGCGAGCAAGTG 70558 Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 ||||||| || || ||||| | || | |||| | | | | | ||||| || || Sbjct 70557 GTTCTTGACATCGTCGTTCCAGAGATTACGCTCGACGAGATCGTTCAACAGATGGGGGTT 70498 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 || | ||| || || || | || | |||||||| | || || || || || Sbjct 70497 CACGATTTGGAAAGTACCGGAAAGGACACCACGAGTGTAGACGTTGGTGCGGTAGGGCTC 70438 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | |||||||| ||||| | ||| || || || || ||||| |||||||| || || | Sbjct 70437 GATGGATTCATTGTTTCCGAGAATCTGCGCGGTGGAGGCCGTCGGCATAGGGGCGACGAG 70378 Query 79176 TAAACTATTTCTAAGACCGTATGATCT-GATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 | || | || ||||| | ||| ||| || || | |||| ||||| | Sbjct 70377 GAGCGAGTTGCGAACACCGT-TCTTCTTGATGAGTTCCCGAAGCGGGGCCCAGTCCCACA 70319 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTT--ACTAGCGTATGA 79292 | | | |||| |||||||| | || | ||| ||||| || || || | || | || Sbjct 70318 GGTTGGTCGGGGTCACATTCCACATGTCGTGTTGCAGAATGCCCTTGGAC-ACCGGA-GA 70261 Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGC 79352 ||| || ||||| || || ||| | |||| ||||| ||| || | || Sbjct 70260 GCCTTCATAGGTTTCGTATGGGCCTAGGGTGCCGGCCAATTCCGCCGACGCTTCAAGGGC 70201 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAA 79412 || |||| || || ||||| |||| ||| || | |||| || | | || Sbjct 70200 ACCATAATGGATAGTCTCGAAGATCTGCTTGTTCAACAGACGTGCGCCTTCGGAAGTGAA 70141 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 |||| | ||| || || || || | || || || || |||||||| || | Sbjct 70140 TGGAAGTCGCATGAGTTGGAAGGCATCAGCGAGGCCCTGGACGCCGATACCGATGGGACG 70081 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 ||| | ||| || || ||||||| || || | || ||||| || || || || || || Sbjct 70080 ATGGCGCTTGTTCGACTTTTCAGCCTCCGGGACGGGGTAATAGTTGATGTCGATGATCTT 70021 Query 79533 ATTGAGATTCCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCG 79589 || | ||| || || | ||| | ||| |||| | ||| ||||| ||| Sbjct 70020 GTTCAAGTTCTTGGTGACAGT--CTTCGTG-ACAGCCTTCAACTTGTTGAAATCGAATT- 69965 Query 79590 TCCATCTATT-------ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTA 79642 || | || || || ||||||||||| || |||||||| || ||||| | Sbjct 69964 --CA-CGGTTGGGGCCGACGAAGCGGTTCAACGCGATCGACGCCAGATTGCAGACGGCGA 69908 Query 79643 CCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTC 79702 |||||| || | |||| | ||||| ||||| ||||| || || || || |||| Sbjct 69907 CCTCATCAGGGGCGCTGTATTCGACGATTTCGGTGCACAGGTTGCTGCATTTGATCGTTC 69848 Query 79703 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTAC 79762 | | || || || || ||||| ||| || || || || ||||| ||| | || || | Sbjct 69847 CGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGC 69788 Query 79763 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACT 79822 ||||||| | |||| || || ||||||| | |||||||| || | | Sbjct 69787 CAGTTTCGACTTGAGCGCTGATGATGTGCTTCCAGAGATCGCGAGCCTTGATCT--GCTT 69730 Query 79823 T--GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAAC 79880 | | | | ||| || ||||||| || || | ||||||| || ||||| Sbjct 69729 TCGGAAACGCTTCTCCGACTCGTATTTCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCA 69670 Query 79881 ATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTAC 79940 || || | || || || |||| || ||||||| ||||| || || | || Sbjct 69669 GTCCTCAAGACCGGGGCACTCGTGGGGGCACATCAGAGACCAGGTGCCGTCGGTTTCCAC 69610 Query 79941 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCT 79999 || ||||| || ||||| || ||||| ||||| ||| || ||||| | || | | | Sbjct 69609 GCGCTTCATGAAAAGATCGGGGATCCAGAGAGC-ATAGAAGAGATCACGGGCACGCTCTT 69551 Query 80000 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 80059 |||| || |||||| || | ||| | || | | | || || | |||||||||| Sbjct 69550 CCTCAGCACCACGATTCTTCTTCATATCCATGACCTCAAAGATGTCTGCGTGCCACGGTT 69491 Query 80060 CCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 80119 | | ||| ||||| | | | || || || |||||||| |||||||| | ||| | ||| | Sbjct 69490 CGAGGTAGATGGCGAAAGCGCCAGGACGCTTGTTTCCGCCCTGATCGACGTAGCGAGCAG 69431 Query 80120 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 80179 |||| || | || | | ||| || | || |||||||| || ||| || | | Sbjct 69430 TGTTGTTGAATACACGGAGCATCGGGACAAGGCCATTGGAGACTCCGCCGGTACCAGCAA 69371 Query 80180 TATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTT 80237 | | | |||| ||||||| || || | |||| || || || || || || || Sbjct 69370 TGTGGGATCCAGTGGCACGGATGTTGTGAACATTG--AGCCCAATGCCGCCGGCTGACTT 69313 Query 80238 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 ||||| ||||||| | || || || || | ||||| || ||||| ||||| ||| Sbjct 69312 TGAGATCTTTGCGCATTGCTTCAATGTGTCGAAAATGCCATCGATGCTGTCATCCGACAT 69253 Query 80298 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 80357 | || | || ||| ||||| || | ||| || |||||||| || | || || Sbjct 69252 AGTTAGCAAGAAGCAGGACGACATCTGAGGCCGAGGGGTACCCGCATTGAACAGAGTGGG 69193 Query 80358 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 80404 | || || || ||||| || |||| |||||||| |||| || Sbjct 69192 CGTGGCATGGGTGAACCAGCGCTCGGACATGAGATTGTAGGTCTGAA 69146 >seq585 Length=222271 Score = 134 bits (148), Expect = 2e-26 Identities = 775/1222 (63%), Gaps = 34/1222 (3%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||||||||| | || || ||||| | ||||| ||| || | || ||| Sbjct 91251 TGATCAATGAAGGCTCCACGATCGGCGGCCATCTCGATGATGTCCTTCTGACGGATCTCC 91310 Query 78919 CAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 78974 || | ||| || || | ||| ||| || | ||||| | | | | ||||| | || Sbjct 91311 CAGACAGTCTTGTACAGCTC-CTTGATGTAGTCTGGGATGCCTCGGATGTTCTGCACCGA 91369 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 |||| | || || | || ||||| || ||||||||||| | || ||| | Sbjct 91370 GCCACTGGCGGCGATCAGGCTGTTCTTCATGTCTTCATTCCAGAGGTTCAAATCGACAAG 91429 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094 | | || ||||||||||| || | ||| || || || | |||| || ||||| Sbjct 91430 GTCCTTCAGCAGATGCGGATTCACGATTTGGAAAGTGCCGGAAAGGACTCGACGGGTGTA 91489 Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154 | ||| || ||| || || | ||||| || || || | ||| || || || || || Sbjct 91490 CACATTGTCGGCATAGGGCTCGATGGATTCGTTGTTGCCGAGAATCTGCGCGGTGGAAGC 91549 Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCT-GATTTTATCTT 79213 ||| ||||| || || || | | || | | ||||| | ||| ||| | Sbjct 91550 CGTCGGCATGGGGGCGACGAGGAGCGAGTTGCGGACACCGT-TCTTCTTGATGAGTTTCC 91608 Query 79214 TTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 || | |||| ||||| || | || |||| || ||||| | || | ||| |||| Sbjct 91609 GAAGCGGGGCCCAGTCCCATAGGTTAGTCGGGTTGACCTTCCACATGTCGTGTTGCAGAA 91668 Query 79274 TACCGTT--ACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331 | || || || | || || ||| || || || || | || | | |||| | Sbjct 91669 TGCCCTTCGAC-ACCGGG-GACCCTTCATAGGTCTCGTAGGCACCATGAATACCGGCCAG 91726 Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT- 79390 ||| ||| || | || ||||| || ||||| || || |||| ||| || ||| Sbjct 91727 TTCCGCCGACGCTTCAAGGGCACCGTAGTAGATGGTCTCAAAGATCTGCTTGTTCAGACG 91786 Query 79391 -CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 || | || | | || | | || || | ||| || || || || | || Sbjct 91787 CCTCGCGCCT-TCGGA-AGCGAACGGCAGTCGCATGAGTTGGAAGGCATCAGCGAGGCCC 91844 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 || || || |||||||| || | ||| | ||| || || ||||||| || |||| ||| Sbjct 91845 TGGACGCCGATACCGATGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGAACAGGG 91904 Query 79510 TAATAATTAATATCTATAATTTTATTGAGATTCCTG---ACTATTACTTTGACCACATCC 79566 ||||| || || || || || || || | ||| || || | ||| | ||| || Sbjct 91905 TAATAGTTGATGTCGATGATCTTGTTCAAGTTCTTGGTGACGGT--CTTCGTG-ACAGCC 91961 Query 79567 TTTAGTTTGAGAAAATCAAATCGTCCATCTATT-------ACAAACATGTTCAACGCGAC 79619 || | ||| ||||| ||| || | || || || ||||||||||| Sbjct 91962 TTCAACTTGTTGAAATCGAATT---CA-CGGTTGGGGCCGACGAAGCGGTTCAACGCGAT 92017 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 || |||||||| || ||||| ||||||| || | |||| | || || ||||| Sbjct 92018 CGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCGGTGCA 92077 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| ||||| || || ||||| | || ||||| || ||||| ||| || ||||| Sbjct 92078 CAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGCATC 92137 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 || || | ||| | || || || ||||||| ||||| | | ||| ||||| | Sbjct 92138 TTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCAAAG 92197 Query 79800 GACTCGAGCCTTTA-TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | | || || | || ||| ||| | |||||| ||||||| || || | Sbjct 92198 GTCACGGGCAAGGACTTGACGAC-GGTAGCGCTTTTCGGACTCGTATTTGGTGTAGAGCT 92256 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 | || ||||| || ||||| ||| || | |||||||| || | || ||||||| | Sbjct 92257 GCTCAAACTCCTCGCCCCAGCAATCCTCGAGACCAGGACACTCATGGGGGCACATCAGGG 92316 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 |||| ||| || | || || ||||| |||||||| || ||||| || || | Sbjct 92317 ACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGA 92376 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | || || | || | | || ||| || || ||||| || |||||||||| | | Sbjct 92377 AGAGGTCACGGGCACGTTCTTCATCGGCACCAGTGTTCTTCTTGAGATCGAGGACTTCGA 92436 Query 80039 TAATATCAGAATGCCACGGTTC 80060 || || | |||||| || || Sbjct 92437 AAACGTCGGCATGCCAGGGCTC 92458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 |||||||||||| || |||||| |||||| || || || || ||||| |||||||| Sbjct 92844 CTCAATAGCTGACTCAATATCCTCGCCATGAATCCCGACAGCAACCCGCATCAACATGTG 92903 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 || |||| ||| | |||||| | | ||||||||||| || |||| || || Sbjct 92904 TTGTGGTCGTTCGGCAATCTTGCCACCCGTCTTCAACAAGTACGACCGCTCCAGGGTCTT 92963 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 || || |||||| |||| | |||| || ||||| Sbjct 92964 GAATCCGAAATAGGTGTAATCATAGTCCCGATCGTA 92999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260360341600