Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq394 109 6e-19 seq97 104 2e-17 seq806 100 3e-16 seq585 98.7 1e-15 >seq394 Length=505719 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| |||||||| ||||| |||||||| ||||| Sbjct 8520 CCACCGCGCAGACGAAGGACGAGATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGCTG 8579 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || || |||| ||||||||||| || || || Sbjct 8580 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGA 8639 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | ||| | ||||| || ||| ||| Sbjct 8640 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGCTGCCTTCGACT 8699 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||| | || || ||||| ||||||||| Sbjct 8700 TCGAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 8747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||||| | |||| ||||| || || || || Sbjct 9234 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 9293 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || |||||||| ||||| || || || Sbjct 9294 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9353 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| ||||| | ||| | |||||||| ||||| || Sbjct 9354 ACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTC 9413 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 9414 TTGACGAAGATCTGCAT 9430 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || || | ||| || || || | || ||||| || || |||||||| ||| Sbjct 9431 GCCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 9490 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| || || || || |||| |||||||||||||| || || Sbjct 9491 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 9550 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || || || | | || | ||||| || ||| || Sbjct 9551 GATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGAC 9610 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||||||||| | || || ||||| || ||||| Sbjct 9611 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 9658 >seq97 Length=72787 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 157055 GCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCC 157114 || |||||||| ||||| || ||||| || || || |||| |||| || ||||| Sbjct 69935 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCG 69876 Query 157115 GCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAA 157174 | |||| ||||||||||| ||| |||| || || ||||| || |||||||| Sbjct 69875 GTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAG 69816 Query 157175 GCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 ||||| ||||| | |||||| || ||||| |||||| ||||| Sbjct 69815 GCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGA 69774 >seq806 Length=689343 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | || | ||| || || | |||||||| || || |||||||||||||| Sbjct 392407 GCCACCGCGAAGTCGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCT 392466 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || ||||| || || || || |||| ||||||||||| || ||||| Sbjct 392467 CAATGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGG 392526 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || ||| || || | | ||| | ||||| || ||| || Sbjct 392527 GATGCCTTCCTTATCTTGAATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAAC 392586 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| ||||| | || || || || || ||||| Sbjct 392587 TTCGAGGGTGATAGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 392634 >seq585 Length=222271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 157055 GCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCC 157114 || |||||||| ||||| || ||||| || || ||||||| |||| || || || Sbjct 92013 GCGATCGACGCCAGATTGCAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCG 92072 Query 157115 GCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAA 157174 | |||| ||||| ||||| ||| |||| || ||| ||||| || |||||||| Sbjct 92073 GTGCACAGGTTGCTACATTTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAG 92132 Query 157175 GCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 || || ||||| | |||||| || ||||||||||| ||||| Sbjct 92133 GCATCTTTGTAGACCATGTAGGGCGTGCCGGTTTCAACTTGA 92174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008442580800