Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq97 178 2e-39 seq319 152 8e-32 seq585 145 1e-29 >seq97 Length=72787 Score = 178 bits (196), Expect = 2e-39 Identities = 369/544 (68%), Gaps = 4/544 (1%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAG 96878 ||| |||||| || || |||||| | | | ||| || || | || ||||| ||| Sbjct 69392 CCAATGGCCTTGTCCCGATGCTCCGTGTATTCAACAACACTG-CTCGCTACGTCGATCAG 69450 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 ||||| || || || || |||||| | ||| ||||| | ||||| |||||||| ||| | Sbjct 69451 GGCGGAAACAAGCGTCCTGGCGCTTTCGCCATCTACCTCGAACCGTGGCACGCAGACATC 69510 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 ||||| | || || ||| || || ||| ||| || | || ||| | || | Sbjct 69511 TTTGAGGTCATGGATATGAAGAAGAATCGTGGTGCTGAGGAAGAGCGTGCCCGTGATCTC 69570 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGG 97058 || ||||| |||||| | || ||| | |||||||||||||| | || ||| |||| Sbjct 69571 TTCTATGCTCTCTGGATCCCCGATCTTTTCATGAAGCGCGTGGAAACCGACGGCACCTGG 69630 Query 97059 AGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 || ||||||||| || || |||||||| || ||||||||||| |||| ||| Sbjct 69631 TCTCTGATGTGCCCCCACGAGTGCCCCGGTCTTGAGGACTGCTGGGGCGAGAAGTTCGAG 69690 Query 97119 GCCAAGTACACGGCCTACGAGCAAGAG-GGCCGATACGTGAGACGAGTCGATGCACGAGA 97177 | |||||| |||||| ||| || | || || || || | || || || Sbjct 69691 GAGCTCTACACGAAATACGAGTCGGAGAAGCGTTTCCGAAAGCAGA-TCAAGGCTCGCGA 69749 Query 97178 ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 || |||||| |||| | | ||||| || || ||||| || || ||||| || ||||| Sbjct 69750 TCTCTGGAAGCACATCATCAGCGCTCAAGTCGAAACTGGCACCCCCTACATGCTTTACAA 69809 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 || || || || || |||||||| | || | || || ||||| || ||| || Sbjct 69810 AGACGCCTGCAACCGTAAGAGCAACCAGCAGAACCTCGGAACGATCAAATGCAGCAACCT 69869 Query 97298 GTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 |||||| ||||| || || ||| | | || || ||| || || ||| |||||| || Sbjct 69870 GTGCACCGAAATCGTCGAATACAGCGCCCCTGATGAGGTCGCCGTCTGCAATCTGGCGTC 69929 Query 97358 GGTC 97361 | || Sbjct 69930 GATC 69933 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 97988 CAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGA-GTTGCGCAGAATCTACAAGA 98046 || ||| ||| |||||||||| || ||||||||| || || | ||| ||||||||| Sbjct 70572 CAGTGGCTCCGTTCAAAACATCCCCGGCATCCCGGATGACGTCAAGGAGA-TCTACAAGA 70630 Query 98047 CTGTCTGGGAGAT---TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCT 98103 | |||||||| || || || | ||| | ||| | ||||| ||||| | || | || Sbjct 70631 CCGTCTGGGAAATCAGTCAGA--AGGAC-ATCATCCAGATGGCCGCCGATCGTGGCGCCT 70687 Query 98104 ACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGA 98163 |||||| ||| |||||||| ||| || | || | ||||| | |||| | | | Sbjct 70688 TCATTGATCAGTCGCAATCGTTGAATTTGCATCTTCCGGAGCCGAGCTACGCCCATTGCA 70747 Query 98164 CTTCGATACACTTTTACGCATGGAACAA 98191 ||||||| ||||||| ||| ||||| || Sbjct 70748 CTTCGATGCACTTTTTCGCGTGGAAGAA 70775 >seq319 Length=516904 Score = 152 bits (168), Expect = 8e-32 Identities = 412/618 (67%), Gaps = 23/618 (4%) Strand=Plus/Minus Query 125145 TTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCT 125204 ||||||||||| || | || || || || |||||||| || ||| | ||| ||||| Sbjct 272261 TTGGCCTTCTTCGCGGCGTCTGACGGCATTGTCAACGAAAACCTGGTCGAACGCTTCTC- 272203 Query 125205 CAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGA 125262 |||| | | ||| || |||| || ||| ||||| |||||| | || || | Sbjct 272202 CAAG-GAAGTCCAAGTCACCGAGGCCAAGTTCTTCTACGGCTTCCAAGTGGCCATCGAAA 272144 Query 125263 ACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT--CG-CGATCCGCAAC 125319 || | ||| |||||||||| | ||||| | | ||| || || ||| | | | Sbjct 272143 ACATTCACAGCCAAATGTACTCCATGCTGATCCAGACGTATATCACCGACGAGAAGGAGC 272084 Query 125320 GTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAAT 125379 | || | |||| || ||||| ||| || | | |||| || || ||||| | | Sbjct 272083 GCAACC---TGCTATTCAACGCCATCTACGAGTTCCCGTTCATCAAGAAGAAGGCCGATT 272027 Query 125380 GGGTGATTCGG-TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 ||| | |||| |||||| || | || | || | || ||| | | | || ||| Sbjct 272026 GGGCG-TTCGCATGGATCAGCAACCAGGAGGCGTCCTTCGGCGAACGGGTCATCGCTTTC 271968 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 |||||||| |||||||||||||| ||||| || || |||||||| ||||||||| | Sbjct 271967 GCCGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTC-GCAGCCATCTTCTGGCTCAAGGA 271909 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 ||||| ||||||||||| ||||| ||| || ||| | || || || || |||||||| Sbjct 271908 ACGCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATCTCCCGTGATGAGGGCCT 271849 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617 || | |||||||| ||| |||| ||| |||| | || || || Sbjct 271848 TCATCGCGACTTTGCTTGTCTTATGTT---CAAACATCT------CAAGAACAAGCCCTC 271798 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | | ||| || | |||| | ||||||||| | ||| ||||| ||||| || || Sbjct 271797 CCAGGAACGCATCTGCGACATCATCCGCGATGCCGTCAAGATCGAACAGGAGTTCCTCAC 271738 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 ||| || | || ||| ||||| || ||||||||| || ||| || ||||| || Sbjct 271737 TGAAGCCTTGCCCGTCGATATGATCGGTATGAACTGCCGCCTCATGGCTGAATACATCGA 271678 Query 125738 GTTTGTGGCAGATCGTCT 125755 || || || |||| ||| Sbjct 271677 GTACGTTGCTGATCATCT 271660 >seq585 Length=222271 Score = 145 bits (160), Expect = 1e-29 Identities = 357/539 (66%), Gaps = 7/539 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 ||||| || || |||||| | | | ||| | | | || ||| | | || ||||| Sbjct 92548 GGCCTTGTCCCGATGCTCCGCGTCTTCAACAACACGGCTCGTTACATCAACCAAGGCGG- 92490 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 ||| || || || || | |||||||| | || || ||||| || |||||||| || Sbjct 92489 --TAAGCGTCCCGGTGCCTTTGCCGTCTATCTCGAGCCCTGGCATGCCGACGTTTTCGAA 92432 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 | |||| | || ||| |||| || || | ||| ||| | ||| | || || Sbjct 92431 GTCCTCGATCTCAAGAAGAACACTGGTGCCGATGAAGAACGTGCCCGTGACCTCTTCTAC 92372 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 || |||||| | || ||| | ||||||||||||||| | || || |||| ||| Sbjct 92371 GCCCTCTGGATCCCCGATCTCTTCATGAAGCGCGTCGAAACCGACGGAACCTGGTCCCTG 92312 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 ||||||||| | || || ||||| |||||||||||||| ||||||||| Sbjct 92311 ATGTGCCCCCATGAGTGTCCTGGTCTCGAGGATTGCTGGGGCGAGGAGTTTGAGCAGCTC 92252 Query 97125 TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGG 97184 ||||| |||||| || || ||| | | |||| ||| || || || ||| Sbjct 92251 TACACCAAATACGAGTCCGAAAAGCGCTACCGTCGTCAAGTCCTTGCCCGTGACCTTTGG 92192 Query 97185 AAGGCCATCGTGACGG--CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 ||| ||| || ||| |||| || || || || || || ||||| ||||||| ||| Sbjct 92191 AAGCACAT--TGTCGGCTCTCAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATG 92134 Query 97243 CCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 || || || || |||||||||| || | || || ||||| | ||| ||||||| Sbjct 92133 CCTGCAACCGTAAGAGCAACCAACAGAACCTCGGAACGATCAAATGTAGCAACCTGTGCA 92074 Query 97303 CGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 | || || || || ||| | | || || ||| || || ||| |||||| ||| || Sbjct 92073 CCGAGATCGTCGAATACAGCGCGCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGATC 92015 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||||||||| |||||||||||||| ||||| ||| ||||||||||| ||||| Sbjct 95329 GCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTT-GCGGCCATCTTCTGGCT 95271 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||| | ||||| ||||||||||| ||||| ||| || ||| | || || || || || Sbjct 95270 TAAGGAACGCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATTTCCCGTGATGA 95211 Query 125552 GGGCCTACACTGTGACTTTGC 125572 |||||| || | || ||||| Sbjct 95210 GGGCCTTCATCGCGATTTTGC 95190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| Sbjct 123165 GCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGGT-CCTTCGCGGCCATCTTCTGGCT 123223 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||| | ||||| ||||||||||| ||||| ||| || ||| | || || || || || Sbjct 123224 CAAGGAACGCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATTTCCCGTGATGA 123283 Query 125552 GGG 125554 ||| Sbjct 123284 GGG 123286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050492554400