Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq806 132 4e-26 seq394 129 5e-25 >seq806 Length=689343 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||| || | ||| |||||||||| ||| | |||||| Sbjct 392426 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCGCTCAATGTGCGGCCATCCTCG 392485 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | | |||||| || ||||| || ||||| || || | | Sbjct 392486 AGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGA 392545 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| ||||| | || || || | ||||| || ||| Sbjct 392546 ATCTTAGCCTTGACGTTTTCGATGGTGTCGCTGCCTTCAACTTCGAGGGTGATAGTCTTT 392605 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || || |||||||||||||||| Sbjct 392606 CCGGTAAGGGTCTTGACAAAGATCTGCATGC 392636 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||||| | |||||||| | ||||||||||| || | ||| || ||| Sbjct 392180 CCGCCGCGCAATCTGAGGACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCGGAG 392239 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || ||||| || ||| | ||||| | | ||||||||||| ||| Sbjct 392240 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 392299 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || ||||||||| | | ||||| | || || Sbjct 392300 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAACCCTCAACT 392359 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||||| ||||| ||||| || || || ||||||||||||| Sbjct 392360 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATGC 392408 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | |||||||| | ||||| ||||| || | ||| || || ||| Sbjct 391724 CCTCCACGGAGTCGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTC 391783 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| || ||| ||||||| | | ||||||||||| ||| Sbjct 391784 AATGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 391843 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || || || || ||| ||||| | || || Sbjct 391844 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTGCCTTCAACT 391903 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || |||||||| || || || ||||||||||||| Sbjct 391904 TCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATGC 391952 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| | || | ||| || ||||| |||||| Sbjct 391982 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCAAGCTGCTTTCCG 392041 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | || || ||||| ||||| ||||| || || | ||| ||||||||| Sbjct 392042 GCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTG 392101 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | || || || | ||||| || || ||||| | |||| Sbjct 392102 ACGTTCTCGATGGTGTCTGATCCTTCAACTTCGAGGGTGATAGTCTTGCCAGTCAAAGTT 392161 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 392162 TTCACGAAGATCTGCATGC 392180 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| | ||| | ||| || ||||| |||||| Sbjct 392666 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGCTGCTTTCCG 392725 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || || ||||| ||||| ||||| | || || |||||| Sbjct 392726 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 392785 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | || || || | |||||||| || ||||| || || Sbjct 392786 ACATTCTCAATAGTGTCGCTGCCTTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 392845 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||||||||||||||||| Sbjct 392846 TTCACAAAGATCTGCATGC 392864 >seq394 Length=505719 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||||| |||||||||||| | || |||||||| || | ||| || ||| | Sbjct 9432 CCACCGCGCAATCTCAACACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 9491 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| ||||| || ||| | ||||| | | |||||||||||| || Sbjct 9492 AAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 9551 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || ||||||||| | | |||||| | ||||| Sbjct 9552 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCGCTGCCTTCGACT 9611 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || || || || || || || ||||||||||||| Sbjct 9612 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGC 9660 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||| || ||| || ||| | || || Sbjct 8766 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCG 8825 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | || || | | |||||| ||||| || |||||||| ||||| | Sbjct 8826 AGCTGCTTGCCGGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 8885 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| ||||| | || || |||| ||||| || || Sbjct 8886 ATCTTGGCCTTGACGTTTTCGATGGTGTCGGAACCCTCAACTTCAAGGGTGATAGTCTTG 8945 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | || || |||||||||||||||| Sbjct 8946 CCAGTCAAGGTCTTGACAAAGATCTGCATGC 8976 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| || ||| || || | ||| ||| Sbjct 8994 ACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCC 9053 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| ||||| | ||||| || | ||||| ||||| ||||||||||| || || | Sbjct 9054 AACTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 9113 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| ||||| | ||||| |||| |||||||| || Sbjct 9114 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGCCTTCGACCTCAAGGGTGATGGTCTTG 9173 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| Sbjct 9174 CCAGTGAGGGTCTTGACGAAGATCTGCAT 9202 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| ||| || ||||| || ||| Sbjct 9234 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 9293 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||| ||||| ||||| ||||| ||||| | || || |||||| Sbjct 9294 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9353 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | ||||| || || ||||| | || Sbjct 9354 ACGTTCTCGATGGTGTCGGAGCCTTCGACTTCCAAAGTGATAGTCTTGCCAGTCAAGGTC 9413 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 9414 TTGACGAAGATCTGCATGC 9432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||||||||| | ||| || ||||| | ||| | ||| || ||||| || ||| Sbjct 8550 GTAGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 8609 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | |||||| ||||| ||||| ||||| ||||| | || || |||||| Sbjct 8610 GCGAAGATAAGACGTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 8669 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | ||||| || | || || || || || || || || Sbjct 8670 ACGTTTTCAATGGTGTCGCTGCCTTCGACTTCGAGGGTAATCGTCTTGCCGGTGAGGGTC 8729 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||| ||||| Sbjct 8730 TTGACGAAGATTTGCAT 8746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||| ||||| ||||| ||||| ||||| | || || ||||||||| ||| || Sbjct 9820 TTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGT 9879 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||||| | ||||| || | |||||||| || || || || || || || |||||||| Sbjct 9880 GTCAGAGCCTTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 9939 Query 95005 CATGC 95009 ||||| Sbjct 9940 CATGC 9944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285932578400