Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq848 179 6e-41 seq787 165 1e-36 seq899 161 2e-35 seq930 156 7e-34 seq441 131 3e-26 seq745 102 1e-17 >seq848 Length=373587 Score = 179 bits (198), Expect = 6e-41 Identities = 205/274 (75%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| |||||| || |||||||| || ||||||||||| || || Sbjct 58996 CGCCAAGCGTCATCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 58937 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| |||||||| ||||||||| || || | |||| ||||||| Sbjct 58936 CCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCAGCGGCCTCATCTACGAAGAGAC 58877 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||||| ||| | | |||| || | || ||| ||| Sbjct 58876 CCGTGGCGTCCTCAAGGTCTTCCTCGAGAACATCATCCGCGACTCCGTCACCTACTGCGA 58817 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| |||||| ||||||| ||||||| || | || |||||||| Sbjct 58816 GCACGCCAAGCGTAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGTCAAGG 58757 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAATCT 16702 | |||| | || ||||| || ||||| || Sbjct 58756 C---AAGACCCTCTACGGTTTCGGCGGTTAAGCT 58726 >seq787 Length=267941 Score = 165 bits (182), Expect = 1e-36 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || ||||||||||| || || Sbjct 99537 CGCCAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCAT 99596 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || |||||||| || || | |||| || |||| Sbjct 99597 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 99656 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| | | |||| |||| | || || ||| Sbjct 99657 CCGCGGCGTCCTCAAGGTCTTCCTCGAGAACATCATCCGTGATTCGGTCACGTACTGCGA 99716 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| |||||||||| | || ||||| || Sbjct 99717 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTATGCCCTCAAGCGTCAGGG 99776 Query 16672 C 16672 | Sbjct 99777 C 99777 >seq899 Length=783189 Score = 161 bits (178), Expect = 2e-35 Identities = 199/271 (73%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || ||||||||||| || || Sbjct 716324 CGCCAAGCGTCATCGCAAGGTTCTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCAT 716383 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || |||||||| || || | |||| || |||| Sbjct 716384 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 716443 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| | | |||| |||| | || || ||| Sbjct 716444 CCGCGGCGTCCTCAAGGTCTTCCTCGAGAACATCATCCGTGATTCGGTCACGTACTGCGA 716503 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| |||||||||| | || || || || Sbjct 716504 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTATGCCCTCAAGCGCCAGGG 716563 Query 16672 CCGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 | |||| | || ||||| || ||||| Sbjct 716564 C---AAGACCCTCTACGGTTTCGGCGGTTAA 716591 >seq930 Length=553560 Score = 156 bits (172), Expect = 7e-34 Identities = 200/272 (74%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || || |||||||| || ||||||||||| || | Sbjct 466362 CGCCAAGCGTCATCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCGA 466304 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| |||||||| |||||||| |||| || | |||| ||||| | Sbjct 466303 TCCGTCGTCTCGCTCGCCGTGGTGGCGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAA 466244 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | ||| |||||||| | | | | |||| || | || || || Sbjct 466243 CTCGCGGTGTCCTCAAGGTCTTCCTCGAAAACATCATCCGCGACTCCGTCACGTACTGCG 466184 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || || ||||| |||||| ||||||| ||||||| || | || || |||| Sbjct 466183 AACACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAAG 466124 Query 16671 GCCGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 || |||| | || ||||| || ||||| Sbjct 466123 GC---AAGACCCTGTACGGTTTCGGCGGTTAA 466095 >seq441 Length=50501 Score = 131 bits (144), Expect = 3e-26 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | || || || ||||||||||| || ||||||||||| || | Sbjct 22479 CGCCAAGCGTCATCGCAAGGTC-CTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCA 22421 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || |||||||| || || | ||||||| |||| Sbjct 22420 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGCATCAGCGGCCTCATCTATGAGGAGA 22361 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 ||| ||||||||| | ||||| ||| | |||||| |||| Sbjct 22360 CTCGCAGCGTTTTGAAGGTGTTCCTGGAGAACATTATCCGTGAT 22317 >seq745 Length=814844 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||| | || ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 678853 ATCGAGGGCATCACTAAGCCGGCCATCCGGCGTCTCGCTCGTCGTGGCGGCGTCAAGCGC 678794 Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585 || ||| | |||| | ||||| || || ||||| ||||||| | | | | Sbjct 678793 ATCAGTGGCCTCATCTACGCAGAGACCCGAAGCGTCCTGAAGGTCTTCCTAGAAAACATC 678734 Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 |||| || | || ||| ||| ||||| || || ||||| |||||| ||||||| Sbjct 678733 ATCCGCGACTCCGTCACCTACTGCGAACACGCCAAGCGCAAGACCGTCACCGCCATGGAC 678674 Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||||||| || | || || | ||| | | | || ||||| || ||||| |||| Sbjct 678673 GTCGTCTACGCCCTCAAGCGCCGAGGAAGGACCCTCTACGGTTTCGGCGGTTAAGCTTC 678615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074340551420