Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq394 107 2e-18 seq806 104 2e-17 seq97 95.1 1e-14 seq585 84.2 2e-11 >seq394 Length=505719 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | ||||| | ||| | ||| | Sbjct 9430 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTCC 9371 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 9370 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 9311 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || |||||| || || ||||||| | | | | |||||||||| ||| Sbjct 9310 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAAC 9251 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || ||||||| ||||| Sbjct 9250 ATCCAGAAGGAGTCGACCCTCCATCTCGTCCT 9219 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | |||||| | ||| | || | Sbjct 8974 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAAGTTGAGGGTTCC 8915 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 8914 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 8855 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || |||||| || |||||||| | | | | |||||| ||| Sbjct 8854 CAACGTCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTTTGTCCGACTACAAC 8795 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 || ||||| |||||||| |||| ||||||| || Sbjct 8794 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTCAG 8760 >seq806 Length=689343 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || ||||| || | |||||| ||||| | ||| | Sbjct 392178 ATGCAGATCTTCGTGAAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCA 392119 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||||| || || ||||| || || || || ||| Sbjct 392118 GACACCATCGAGAACGTCAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 392059 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||| || || || ||||||| | | | || |||||| ||| Sbjct 392058 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAAC 391999 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||| ||||| Sbjct 391998 ATCCAGAAGGAATCCACACTCCATCTCGTCCT 391967 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || ||||| | |||||| ||||| | ||| | | Sbjct 392634 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGC 392575 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| || || ||||| || ||||| || || Sbjct 392574 GACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAG 392515 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || |||||| || ||||| |||| | | | ||||| || ||| Sbjct 392514 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAAC 392455 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || |||||||| |||| |||| || ||||| | || || Sbjct 392454 ATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGACTTCGCGGTGG 392408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || |||||||| | ||| | ||| | | Sbjct 391950 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAAGGCAGC 391891 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| ||||| ||||| ||||| || || || ||||| Sbjct 391890 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 391831 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | |||||| || ||||| |||| | | | || ||||| ||| Sbjct 391830 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGTGACTACAAC 391771 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || || ||||| | || ||||||| |||| | ||||| || Sbjct 391770 ATCCAGAAGGAGTCTACCCTTCACTTGGTCCTCCGACTCCGTGGAGGTAA 391721 >seq97 Length=72787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 318/486 (65%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 148066 CGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGttttttt 148125 |||| |||| |||||||||| ||||| |||||| | ||| ||| ||| | | Sbjct 69895 CGCTGTATTCGACGATTTCGGTGCACAGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCT 69836 Query 148126 GATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGACTT 148185 | || | ||| ||| | ||||| | | |||||| || | || || ||||||| Sbjct 69835 GGTTGCTCTTACGGTTGCAGGCGTCTTTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTT 69776 Query 148186 GAGTCTCAATAATTT--TTCTATGAAGATCTAAAGCCGAAATTTGTTTTTT-AAACTTGC 148242 ||| || || | ||| | ||||| |||| || || ||| |||| || Sbjct 69775 GAGCGCTGATGATGTGCTTCCAG--AGATCGCGAGCCTTGATCTGCTTTCGGAAAC--GC 69720 Query 148243 CT-TCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAA 148301 | || | |||||| || ||| || |||||||| | | ||| |||| || | | | Sbjct 69719 TTCTCCGACTCGTATTTCGTGTAGAGCTCCTCGAACTTCTCGCCCCAGCAGTCCTCAAGA 69660 Query 148302 CCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATA 148361 ||||| ||||||| ||||||||||| ||||| | || | || | || | |||||| Sbjct 69659 CCGGGGCACTCGTGGGGGCACATCAGAGACCAGGTGCCGTCGGTTTCCACGCGCTTCATG 69600 Query 148362 AACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCC 148421 || ||||| || |||| | ||| | | ||||| || || | ||||| ||||| Sbjct 69599 AAAAGATCGGGGATCCAGAGAGCATAGAAGAGATCACGGGCACGCTCTTCCTCAGCACCA 69540 Query 148422 ATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACG 148481 ||| ||| | ||||| | ||| | |||||||||||| || |||| ||| | | Sbjct 69539 CGATTCTTCTTCATATCCATGACCTCAAAGATGTCTGCGTGCCACGGTTCGAGGTAGATG 69480 Query 148482 GTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAA 148537 | | ||||| | | || || || |||||||| | ||| |||| || | || || Sbjct 69479 GCGAAAGCGCCAGGACGCTTGTTTCCGCCCTGATCGACGTAGCG-AGCAGTGTTGTTGAA 69421 Query 148538 AACACG 148543 ||||| Sbjct 69420 TACACG 69415 >seq585 Length=222271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 181/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 148244 TTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACC 148303 ||||| |||||| || ||| || | ||| || || | ||| ||||||| | | ||| Sbjct 92231 TTCGGACTCGTATTTGGTGTAGAGCTGCTCAAACTCCTCGCCCCAGCAATCCTCGAGACC 92290 Query 148304 GGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATAAA 148363 |||||||| | ||||||||||| ||||| | || | || | || | |||||| || Sbjct 92291 AGGACACTCATGGGGGCACATCAGGGACCAGGTTCCGTCGGTTTCGACGCGCTTCATGAA 92350 Query 148364 CAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC-CTTCATATCCTCGGCACCCA 148422 ||||| || |||| | ||| | | || || || || | | | || |||||||| Sbjct 92351 GAGATCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACGTTCT-TCATCGGCACCAG 92409 Query 148423 TATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGG 148482 | || ||| ||||| | | |||||||| || ||||| ||||||| || |||| Sbjct 92410 TGTTCTTCTTGAGATCGAGGACTTCGAAAACGTCGGCATGCCAGGGCTCGAGATAGACGG 92469 Query 148483 TCATGGCGCCTTTCCTTTTACCTCCTTG 148510 | ||| || | ||||| ||||| Sbjct 92470 CAAAGGCACCGGGACGCTTACCGCCTTG 92497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478656775716800