Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq585 239 1e-57 seq97 201 3e-46 seq639 95.1 3e-14 seq150 87.8 5e-12 >seq585 Length=222271 Score = 239 bits (264), Expect = 1e-57 Identities = 1040/1616 (64%), Gaps = 48/1616 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || |||||||| ||| ||| |||||| || || | | || |||||||| || Sbjct 92767 TTCACTCATGCCACGCCCACACTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCC 92708 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||| || || ||| | || || ||||| ||||| || ||| | Sbjct 92707 TGCTTCCTGTTGACCATGTCAGAGGACTCCGTTGAAGGCATCTTCGACACCCTGAAGCAG 92648 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||||| || |||| || || || || || | | || ||||||| | ||||| Sbjct 92647 TGTGCTCGCATCAGCAAGTCCGCTGGTGGCATCGGCATCAACG-TCCACAACATCCGTGC 92589 Query 363726 A--CAGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 | |||| | |||| ||||| || || |||| | || || || || ||||| Sbjct 92588 CGCCGGAACCCGTG---TCGCTGGCACTGGTGGCATCTCGCACGGCCTTGTCCCGATGCT 92532 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 || || || |||| || || | ||| || |||| || || ||||| || || Sbjct 92531 CCGCGTCTTCAACAACACGGCTCGTTACATCAACCAAGGCGGT---AAGCGTCCCGGTGC 92475 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 ||||| | ||||||||||| |||||||| |||| || | || || ||| ||| Sbjct 92474 CTTTGCCGTCTATCTCGAGCCCTGGCATGCCGACGTTTTCGAAGTCCTCGATCTCAAGAA 92415 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || || ||| ||||| ||||| || ||||| || || ||| | | || Sbjct 92414 GAACACTGGTGCCGATGAAGAACGTGCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGA 92355 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 | || ||||||||||| || | | | ||||| || | ||||| || || || Sbjct 92354 TCTCTTCATGAAGCGCGTCGAAACCGACGGAACCTGGTCCCTGATGTGCCCCCATGAGTG 92295 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTAT--GTTGCTCTATACGAAAAGTATGAA 364080 ||| ||||| ||| ||||| || || | | | |||||| || ||| || || Sbjct 92294 TCCTGGTCTCGAGGATTGCTGGGGCGAGGAGTTTGAGCAGCTCTACACCAAA--TACGAG 92237 Query 364081 TCGGAGGGAAAG-GCT--CGTAAGACAATTCC-CGCACAGAAGCTATGGTTTGCCATCAT 364136 || || |||| ||| ||| | ||| ||| || | | || ||| ||| | Sbjct 92236 TCCGA---AAAGCGCTACCGT-CGTCAAGTCCTTGCCCGTGACCTTTGGAAGCACATTGT 92181 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 | || || |||| || || || ||||| ||| | ||||||||| | |||||||| || Sbjct 92180 CGGCTCTCAAGTTGAAACCGGCACGCCCTACATGGTCTACAAAGATGCCTGCAACCGTAA 92121 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256 | |||||| ||| |||| || || || | |||||||| || |||||||| | || Sbjct 92120 GAGCAACCAACAGAACCTCGGAACGATCAAATGTAGCAACCTGTGCACCGAGATCGTCGA 92061 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT--TCCG--G 364312 ||||| ||| || || ||| ||||| || || || |||||||||||| | ||| Sbjct 92060 ATACAGCGCGCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCGTTGAACCGCTT 92001 Query 364313 CGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGAC-GTAACCTATCATGCT 364371 ||| | | | || || || || || || | | | || || | | Sbjct 92000 CGTCGGCCCCA-ACCGTGAATTCGA-TTTCAACAAGTTGAAGGCTGTCACGAAGACCGTC 91943 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 || || | ||||| | ||||||| || ||||| || |||| || || || Sbjct 91942 ACCAAGAACTTGAACAAGATCATCGACATCAACTATTACCCTGTTCCGGAGGCTGAAAAG 91883 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT---T 364488 || || | ||| ||||| || || ||| | || || |||||||||||||| | || Sbjct 91882 TCGAACAAGCGCCATCGTCCCATCGGTATCGGCGTCCAGGGCCTCGCTGATGCCTTCCAA 91823 Query 364489 ATGATGCTCAAGA-TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | |||| || || | || | ||| | ||| | ||| || ||| ||||||| Sbjct 91822 CTCATGC----GACTGCCGTTCGCTTCCGAAGGCGCGAGGCGTCTGAACAAGCAGATCTT 91767 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAA 364607 ||| || || || | | || | || ||| || |||| | | || Sbjct 91766 TGAGACCATCTACTACGGTGCCCTTGAAGCGTCGGCGGAACTGGCCGGTATTCATGGTGC 91707 Query 364608 GTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 ||| || ||||| |||||||| | ||| |||| | | || || | ||||| Sbjct 91706 CTACGAGACCTATGAAGGGTCCCCGGTGTCGAAGGGCATTCTGCAACACGACATGTGGAA 91647 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGG 364727 |||| || || || |||| |||||| |||| || | | |||||| | || Sbjct 91646 GGTCAACCCGACTAACCTATGGGACTGGGCCCCGCTTCGGAAACTCATCAAGAAGAACGG 91587 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 | |||||||| ||| | || |||||||| |||||||| || || ||||| ||||| Sbjct 91586 TGTCCGCAACTCGCTCCTCGTCGCCCCCATGCCGACGGCTTCCACCGCGCAGATTCTCGG 91527 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 |||||||| | | |||| || | | | |||| | || | || || || |||||||| Sbjct 91526 CAACAACGAATCCATCGAGCCCTATGCCGACAATGTGTACACCCGTCGAGTCCTTTCCGG 91467 Query 364848 AGAATTTCC-GGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | ||||| | || ||| | | || | ||||| ||| ||| || ||| Sbjct 91466 -CACTTTCCAAATCGTGAATCCGCATCTGCTGAAGGACCTTGTCGATTTGAACCTCTGGA 91408 Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966 ||| |||||||||| | |||||||| | ||| || ||||||||||| | ||| Sbjct 91407 ATGAAGACATGAAGAACAGCCTGATCGCCGCCAGTGGCTCGGTGCAGAACATCCGAGGCA 91348 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTCT 365024 | ||||| | | ||| | ||||| || || ||||| | ||| | ||| | Sbjct 91347 TCCCAGACTACATCAAGGAGCTGTACAAGACTGTCTGGGAGA--TCCGTCAGAAGGACAT 91290 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC--GTA 365082 ||| || ||||| |||||||| || || || || |||| || ||| | ||| | | Sbjct 91289 CATCGAGATGGCCGCCGATCGTGGAGCCTTCATTGATCAGTCGCAATCGCTCAACTTGCA 91230 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 || || | || |||| ||| | ||| || ||||||||||| | ||||| Sbjct 91229 TT--TGCCGGTCCCGACCTACGCTCATTGTACCTCGATGCATTTCTATGCTTGGAA 91176 >seq97 Length=72787 Score = 201 bits (222), Expect = 3e-46 Identities = 507/764 (66%), Gaps = 10/764 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || |||||||| || ||| |||||| || || | | || |||||||| || Sbjct 69178 TTCACCCATGCCACGCCCACTCTGTTCAATGCGGGTACCCCTCGGCCTCAGATGTCGTCC 69237 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | |||| ||| ||| || |||||| || || || |||||| | ||| | Sbjct 69238 TGCTTCTTGCTAACTATGTCGGATGACAGCATCGATGGCATTTTCGACACATTGAAGCAA 69297 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || || || || ||| || ||||| ||||| | | ||||| | ||||| Sbjct 69298 TGCGCAAAGATCTCAAAGTCAGCCGGCGGCATTGGGCTCAATGTTCACAACATCCGTGCC 69357 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | ||||| || || || ||| ||| ||||| || || || ||||| || Sbjct 69358 ACTGGATCCC-ACATTGCTGGTACCGGCGGAGTCTCCAATGGCCTTGTCCCGATGCTCCG 69416 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| ||||| | |||||||| ||||| ||| ||||| || || || Sbjct 69417 TGTATTCAACAACACTGCTCGCTACGTCGATCAGGGCGGAAACAAGCGTCCTGGCGCTTT 69476 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || ||||| || || || || || |||||| | | || | ||| || Sbjct 69477 CGCCATCTACCTCGAACCGTGGCACGCAGACATCTTTGAGGTCATGGATATGAAGAAGAA 69536 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 || |||||| |||||| |||||||| |||||||| || ||| | | || | Sbjct 69537 TCGTGGTGCTGAGGAAGAGCGTGCCCGTGATCTCTTCTATGCTCTCTGGATCCCCGATCT 69596 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 ||| |||||||||||||| | | | ||||| || | ||||| ||||| || || Sbjct 69597 TTTCATGAAGCGCGTGGAAACCGACGGCACCTGGTCTCTGATGTGCCCCCACGAGTGCCC 69656 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCG 364083 |||||| || ||||| || | | | |||||| |||||| || || ||| Sbjct 69657 CGGTCTTGAGGACTGCTGGGGCGAGAAGTTCGAGGAGCTCTACACGAAA--TACGAGTCG 69714 Query 364084 GAGGGAAAGGCT--CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 || ||| | | || ||| || || | | || ||| |||||| Sbjct 69715 GA--GAAGCGTTTCCGAAAGCAGATCAAGGCTCGCGATCTCTGGAAGCACATCATCAGCG 69772 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || || ||||| ||| | |||||||| | |||||||| ||| || Sbjct 69773 CTCAAGTCGAAACTGGCACCCCCTACATGCTTTACAAAGACGCCTGCAACCGTAAGAGCA 69832 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||||||| |||| || || || | |||||||| || ||||| || | ||||||| Sbjct 69833 ACCAGCAGAACCTCGGAACGATCAAATGCAGCAACCTGTGCACCGAAATCGTCGAATACA 69892 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCG 364305 ||| || || ||| ||||| || || || |||||||||||| Sbjct 69893 GCGCCCCTGATGAGGTCGCCGTCTGCAATCTGGCGTCGATCGCG 69936 >seq639 Length=70176 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 111343 ATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATG 111402 ||||||| ||| | |||||||||||| |||||||| | |||||| ||| |||| || | Sbjct 20324 ATTGGAAAGGAGTCGTCGAAGAACTTTTGTGGTTTTTGTCCGGAAGCACAGATGCCAAAG 20383 Query 111403 AACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT 111462 ||| | || ||| || || || ||||||| |||||| |||||| || |||| Sbjct 20384 CCCTTTCCGCCAAAGGCGTCAAGATCTGGGATGACAATGGAAGGCGTGACATTTTAGACA 20443 Query 111463 CAGTTGG-TCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGG 111521 | |||| | | || || ||||| || || || || | ||||| || || ||| Sbjct 20444 AACTTGGATTCCCTGAACGTCG-TGAAGGAGACCTTGGTCCCATATACGGTTTCCAGTGG 20502 Query 111522 CGCCACTTTGGTGC 111535 |||||||||||||| Sbjct 20503 CGCCACTTTGGTGC 20516 >seq150 Length=71291 Score = 87.8 bits (96), Expect = 5e-12 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 111318 CCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTT 111377 || || ||||| || ||||| || | |||||||| || ||||| ||||| |||||||| Sbjct 35918 CCCCTGCTCACGACGAAGCGCACTTTCTGGAAGGGCATCGTCGAGGAACTGCTGTGGTTC 35977 Query 111378 ATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATG--TAAAAATTTGGGATG 111435 | |||||| || |||| || | || || | | ||| | | || |||||||||| Sbjct 35978 TTGTCCGGAAGCACTGATGCGAAGAAGCT--CAACGAGAAAGGCGTCAAGATTTGGGATG 36035 Query 111436 GAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GA-CAACGAAGAAGGTGA 111493 ||||||| |||| ||| || || |||| ||| | || | || || || || Sbjct 36036 GAAATGGCAGCCGTGCCTTCCTGGACAACCTTGG-CTTCACTGATCGTCG-CGAGGGCGA 36093 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC 111542 || || ||||||||||| || |||||||| || || || || || ||| Sbjct 36094 CCTTGGCCCAGTTTACGGTTTCCAATGGCGTCATTTCGGAGCTGAATAC 36142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303337902735080