Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq806 113 4e-20 seq394 98.7 9e-16 >seq806 Length=689343 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| ||||||| || | || | Sbjct 392634 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGC 392575 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || |||||||| ||||| || || Sbjct 392574 GACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAG 392515 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||| ||||| |||| | | | | |||||||| ||| Sbjct 392514 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAAC 392455 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 392454 ATCCAGAAGGAATCTAC 392438 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | || ||| ||||||| || | Sbjct 392178 ATGCAGATCTTCGTGAAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCA 392119 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||||| || || |||||||| || || || ||| Sbjct 392118 GACACCATCGAGAACGTCAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGACCAA 392059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| || ||||||| | | | | || ||| || ||| Sbjct 392058 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAAC 391999 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| ||| | ||| Sbjct 391998 ATCCAGAAGGAATCCACACTCCAT 391975 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || |||| ||| | ||||| || | || | Sbjct 391950 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAAGGCAGC 391891 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || ||| ||||| ||||| |||||||| || || ||||| Sbjct 391890 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 391831 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| ||||| |||| | | | | || || || ||| Sbjct 391830 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGTGACTACAAC 391771 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || ||||| |||| || || Sbjct 391770 ATCCAGAAGGAGTCTACCCTTCACTTGGT 391742 >seq394 Length=505719 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| |||| || |||| | | Sbjct 10170 ATGCAAATCTTCGTCAAGACCCTGACGGGAAAGACCATCACCCTCGAGGTTGAGGGCTCC 10111 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || |||||||| || || ||||| Sbjct 10110 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCGGATCAG 10051 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || |||||||| ||||| |||| | | | | || ||| || ||| Sbjct 10050 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 9991 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| || |||| || || Sbjct 9990 ATCCAGAAGGAATCCACCCTTCACTTGGT 9962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | ||||| |||| | Sbjct 8974 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAAGTTGAGGGTTCC 8915 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 8914 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 8855 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||||||| |||||||| | | | | | ||| || ||| Sbjct 8854 CAACGTCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTTTGTCCGACTACAAC 8795 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| |||||||| Sbjct 8794 ATCCAAAAGGAATCTAC 8778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || || | |||||||| | | | Sbjct 9430 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTCC 9371 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 9370 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 9311 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||| || ||||||| | | | ||||||| || ||| Sbjct 9310 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAAC 9251 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 9250 ATCCAGAAGGAGTCGAC 9234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931074545700