Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq408 163 2e-35 seq41 156 3e-33 seq28 132 3e-26 seq4 127 1e-24 seq280 104 2e-17 seq806 100 2e-16 seq708 95.1 8e-15 >seq408 Length=260203 Score = 163 bits (180), Expect = 2e-35 Identities = 235/330 (71%), Gaps = 1/330 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| | || | ||||| || || || || ||| | |||||||||||||| ||||| Sbjct 70346 ATGGCGTCCATCAACGTTAACCGCAACGTTATTGACCCCTTCTACCGCTACAAGATGCCC 70405 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || || || |||||||| || ||||| || || || || |||||||||| ||||||| Sbjct 70406 CGTCTCCAGGCTAAGGTCGAAGGCAAGGGCAATGGCATCAAGACCGTCATTGCCAACATG 70465 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || |||| ||||| || || || || | || |||||||| || | || || || Sbjct 70466 ACCGATATCGCGAAGGCTCTTGGTCGTCCCCCGACGTACCCGACCAAGTTCTTTGGCTGT 70525 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 ||||| || || ||||| || ||||| | ||| || || |||| |||||||||||| | Sbjct 70526 GAACTCGGAGCCCAGACCCACTTTGACCTCAAGAATGAACGCTACATCGTTAACGGCGAG 70585 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 || | || |||||| || || | |||||| ||| || ||||| || || || Sbjct 70586 CACGATGCTAACAAGCTTCAAGATCTGCTTGACAACTTCATCAAGAAGTTCGTCCTTTGC 70645 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTT 6491 | ||||| || || ||||||| |||| Sbjct 70646 ACCAACTGCGAGAATCCCGAGACCG-GCTT 70674 >seq41 Length=154017 Score = 156 bits (172), Expect = 3e-33 Identities = 226/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || ||||| || ||| | |||||||||||||| ||||| || || || Sbjct 78251 AATGTTAACCGTAACGTCATCGACCCCTTCTACCGCTACAAGATGCCTCGTCTCCAGGCG 78192 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||||||||| ||||| || || || || || ||||||||||||||| | || |||| Sbjct 78191 AAGGTCGAGGGCAAGGGTAATGGCATCAAGACTGTCATTGTCAACATGACCGATATCGCA 78132 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||||| ||||| || ||| | || || ||||| |||| |||||| ||||| || || Sbjct 78131 AAGGCTCTCGGGCGTCCTCCGACGTATCCGACCAAATTTTTCGGCATAGAACTCGGGTCT 78072 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 || || | |||||| | ||| || || |||| ||| || || || | ||| | | Sbjct 78071 CAAACTCGGTTTGACCCCAAGAATGAACGCTACATTGTCAATGGGGCTCATGGTGCAGAG 78012 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| || ||| | ||||| | || || |||||||| || || | ||||| Sbjct 78011 AAGCTTCAAGACCTGCTTGATGTGTTCATCAAAAAGTTTGTTCTTTGCACCGGTTGCGAG 77952 Query 6474 AACCCGGAGACCGAGCTTA 6492 || |||||||| | | ||| Sbjct 77951 AATCCGGAGACTGCGTTTA 77933 Score = 134 bits (148), Expect = 9e-27 Identities = 221/319 (69%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || ||||| || ||| |||||||||||||||| ||||| || || || Sbjct 7679 AATGTTAACCGTAACGTCATTGACCCGTTCTACCGCTACAAGATGCCTCGTCTCCAGGCT 7620 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| ||||| || || |||||||||| ||| ||| | || |||| Sbjct 7619 AAGATAGAGGGCAAGGGTAACGGAATCAAGACCGTCATTGCCAATATGACCGACATCGCG 7560 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||||| || || || || | || || ||||| |||| ||| || ||||| || || Sbjct 7559 AAGGCCCTTGGGCGTCCGCCGACGTATCCGACCAAATTTTTTGGCATAGAACTCGGGTCT 7500 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 || || | ||||| | ||| || || |||| ||| || || || | ||| | | Sbjct 7499 CAAACTCGCTTTGACCCCAAGAATGAACGCTACATTGTCAATGGGGCTCATGGTGCAGAG 7440 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| || ||| | ||||| | || || |||||||| || || | ||||| Sbjct 7439 AAGCTTCAAGACCTGCTTGATGTGTTCATCAAAAAGTTTGTTCTTTGCACCGGTTGCGAG 7380 Query 6474 AACCCGGAGACCGAGCTTA 6492 || |||||||| | | ||| Sbjct 7379 AATCCGGAGACTGCGTTTA 7361 >seq28 Length=486 Score = 132 bits (146), Expect = 3e-26 Identities = 216/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || ||||| || ||| |||||||||||||||| ||||| || || || Sbjct 174 AATGTTAACCGTAACGTCATTGACCCGTTCTACCGCTACAAGATGCCTCGTCTCCAGGCT 233 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| ||||| || || |||||||||| ||| ||| | || |||| Sbjct 234 AAGATAGAGGGCAAGGGTAACGGAATCAAGACCGTCATTGCCAATATGACCGACATCGCG 293 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||||| || || || || | || || ||||| |||| ||| || ||||| || || Sbjct 294 AAGGCCCTTGGGCGTCCGCCGACGTATCCGACCAAATTTTTTGGCATAGAACTCGGGTCT 353 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 || || | ||||| | ||| || || |||| ||| || || || | ||| | | Sbjct 354 CAAACTCGCTTTGACCCCAAGAATGAACGCTACATTGTCAATGGGGCTCATGGTGCAGAG 413 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| || ||| | ||||| | || || |||||||| || || | ||||| Sbjct 414 AAGCTTCAAGACCTGCTTGATGTGTTCATCAAAAAGTTTGTTCTTTGCACCGGTTGCGAG 473 Query 6474 AACCCGGAGAC 6484 || |||||||| Sbjct 474 AATCCGGAGAC 484 >seq4 Length=2093 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||||||||||||||||||||| || |||||||| Sbjct 830 AAGCCCGTTCCCTTGGCTGTGATTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 889 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| ||| |||||||||||||||||||| Sbjct 890 TAATCCATTCGTGCACGTCACTAATTAGATGACGA 924 >seq280 Length=104067 Score = 104 bits (114), Expect = 2e-17 Identities = 72/82 (88%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||||||||||||||||||||| || |||||||| Sbjct 73857 AAGCCCGTTCCCTTGGCTGTGATTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 73798 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 |||||| ||| ||| ||||||| Sbjct 73797 TAATCCATTCGTGCACGTCACT 73776 >seq806 Length=689343 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | || | ||| || ||| ||||| || || ||||| || || Sbjct 391952 CCACCACGGAGACGGAGGACGAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAG 392011 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || |||||||| || || | ||| ||||| || | ||| Sbjct 392012 AGGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 392071 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||| ||| ||| || |||| || || ||| | ||||||| Sbjct 392072 ATGCCTTCCTTATCTTGAATCTTTGCCTTGACGTTCTCGATGGTGTCTGATCCTTCAACT 392131 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || ||||| || || ||||| ||||||||||| ||||||||| Sbjct 392132 TCGAGGGTGATAGTCTTGCCAGTCAAAGTTTTCACGAAGATCTGCATG 392179 >seq708 Length=339021 Score = 95.1 bits (104), Expect = 8e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || ||||| || ||| |||||||||||||||| ||||| || || || Sbjct 99771 AATGTTAACCGTAACGTCATTGACCCGTTCTACCGCTACAAGATGCCTCGTCTCCAGGCG 99830 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||||||||| ||||| || || || || |||||||||| ||| ||| | || |||| Sbjct 99831 AAGGTCGAGGGAAAGGGCAATGGCATCAAGACCGTCATTGCCAATATGACCGACATCGCG 99890 Query 6294 AAGGCGCTCGGACGCCC 6310 ||||| || || || || Sbjct 99891 AAGGCCCTTGGGCGTCC 99907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943362761140