Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq806 98.7 9e-16 >seq806 Length=689343 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || || | ||||| ||||||| || || Sbjct 392178 ATGCAGATCTTCGTGAAAACTTTGACTGGCAAGACTATCACCCTCGAAGTTGAAGGATCA 392119 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| |||| | ||| || || ||||| ||||| || ||||| Sbjct 392118 GACACCATCGAGAACGTCAAGGCAAAGATTCAA-GATAAGGAAGGCATTCCCCCAGACCA 392060 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | ||||||| || || | ||| ||||| Sbjct 392059 ACAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCCTCTCCGACTACAA 392000 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 391999 CATCCAGAAGGAATCCACACTCCATCTCGTCCT 391967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA-GTCGTC 25057 ||||| || ||||| ||||| | || || || ||||||| |||| || || | | | Sbjct 392862 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAAGGCAGC 392803 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 392802 -GACACTATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 392744 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | ||||||| || ||| | ||| ||||| Sbjct 392743 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCCGACTACAA 392684 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| ||| | || || Sbjct 392683 CATCCAGAAGGAATCCACGCTCCATCTCGTTCT 392651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323035686100