Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq319 87.8 2e-12 seq585 84.2 2e-11 >seq319 Length=516904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 285/443 (64%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||| |||| | || ||||||||| ||| | || || || || || || | ||||||| Sbjct 271819 TTGAACATAAGACAAGCAAAGTCGCGATGAAGGCCCTCATCACGGGAGATGAGCTCATTG 271878 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 | || | ||| || | || || |||| ||||||||| || || | || || Sbjct 271879 GAGTGGGTCAGACCGGGCATGAGACCGCGTTCCTTGAGCCAGAAGATGGCTGCGAAGGAC 271938 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || || ||||| || || || | | |||||| | || || Sbjct 271939 CCGCTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGATGACCCGTTCGCCGAAGGACGCC 271998 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 | ||||||||||| || ||||||||||| || ||||| || | || | Sbjct 271999 TCCTGGTTGCTGATCCATGCGAACGCCCAATCGGCCTTCTTCTTGATGAACGGGAACTCG 272058 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 | ||| ||||| ||||| | ||||| | | || || || || | ||| | | Sbjct 272059 TAGATGGCGTTGAATAGCAGGTTGCGCTCCTTCTCGTCGGTGATATACGTCTGGATCAGC 272118 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | || ||||||| || | || || || || | |||||| |||||||| | | Sbjct 272119 ATGGAGTACATTTGGCTGTGAATGTTTTCGATGGCCACTTGGAAGCCGTAGAAGAACTTG 272178 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || |||| || ||||| | || || | || || || ||||| ||||| || || Sbjct 272179 GCCTCGGTGACTTGGACTTCCTTGGAGAAGCGTTCGACCAGGTTTTCGTTGACAATGCCG 272238 Query 93500 TCGGATGCTGCaaaaaaaGCCAA 93522 || || || || || || ||||| Sbjct 272239 TCAGACGCCGCGAAGAAGGCCAA 272261 >seq585 Length=222271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || | ||| | || ||||||||||| |||| |||||| || |||| ||| Sbjct 122476 ATATACGTCTGGATCAGCATGGAATACATTTCGCTGTGGATATTCTCGATAGCAACCTGG 122417 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| |||||||| | || || |||| || || |||| || || | || || || Sbjct 122416 AATCCATAGAAACACTTGGCCTCGGTGACTTGGACCTCTTTGGAGAAGCGTTCGACCAGG 122357 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||| ||||| || || || || || || || || ||||| Sbjct 122356 TTTTCGTTGACAATGCCGTCAGAAGCCGCGAAGAAGGCCAA 122316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854256885600