Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq806 140 3e-28 seq394 136 3e-27 seq585 116 3e-21 seq594 113 4e-20 seq97 109 5e-19 >seq806 Length=689343 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| |||||||| || | Sbjct 392406 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAGGGTTCA 392347 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || |||||||||||||| |||||||| || ||||| Sbjct 392346 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 392287 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 392286 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 392227 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| ||| | || || || | |||||||||| || Sbjct 392226 ATTCAGAAGGAATCTACCCTCCACTTGGTCCTCAGATTGCGCGGCGG 392180 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || ||||| ||| || | Sbjct 392634 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACTATCACCCTCGAAGTTGAAGGCAGC 392575 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || |||||||| ||||| || || || || || || Sbjct 392574 GACACCATCGAAAACGTCAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAG 392515 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || |||||||| ||| | |||||| |||||| | |||||||||| Sbjct 392514 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGCGATTACAAC 392455 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || ||| | ||| | ||||| || Sbjct 392454 ATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGACTTCGCGGTGG 392408 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || ||||| ||| || | Sbjct 391950 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAAGGCAGC 391891 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || |||||||| || ||||| || ||||| Sbjct 391890 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 391831 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| |||||| | || |||||| Sbjct 391830 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACATTGAGTGACTACAAC 391771 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || || || | ||| | || |||||| Sbjct 391770 ATCCAGAAGGAGTCTACCCTTCACTTGGTCCTCCGACTCCGTGGAGGT 391723 >seq394 Length=505719 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| | || || ||||| ||| || | Sbjct 8746 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACGATTACCCTCGAAGTCGAAGGCAGC 8687 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || ||||| || || || Sbjct 8686 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 8627 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || |||||||| ||| | || ||| ||||||| || ||| |||||| Sbjct 8626 CAACGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCAGCGACTACAAC 8567 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | ||| | || | || ||||||| ||| Sbjct 8566 ATCCAAAAGGAATCTACCCTTCATCTCGTCCTTCGTCTGCGCGGTGGT 8519 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| |||||||| || || Sbjct 8974 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAAGTTGAGGGTTCC 8915 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| ||||| || || || || Sbjct 8914 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 8855 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| ||| | || || ||| || | ||||| |||||| Sbjct 8854 CAACGTCTCATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTTTGTCCGACTACAAC 8795 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || || | | ||||| || ||| Sbjct 8794 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTCAGGTTGCGTGGTGGT 8747 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | ||||| ||| | || Sbjct 9430 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTTTGGAAGTCGAAGGCTCC 9371 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || ||||| || || || Sbjct 9370 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 9311 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| ||| | || ||| |||||| || ||| |||||| Sbjct 9310 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCCTCAGCGACTACAAC 9251 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 9250 ATCCAGAAGGAGTCGACCCTCCAT 9227 >seq585 Length=222271 Score = 116 bits (128), Expect = 3e-21 Identities = 445/691 (64%), Gaps = 17/691 (2%) Strand=Plus/Plus Query 129534 ACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGAC--AACAAGGGATAGTAGTTG 129591 ||||||||| ||||| | || || |||| ||| | |||| || || |||||| Sbjct 91856 ACCGATGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGAACAGGG--TAATAGTTG 91913 Query 129592 ATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCA 129651 ||||| || || ||||| || |||||| || | ||||| || || ||| | | Sbjct 91914 ATGTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTTCGTGACAGCCTTCAACTTGTTG 91973 Query 129652 AAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTG 129711 |||| | | || | | | | |||| || | || | ||||| |||| |||| Sbjct 91974 AAATCGAATTCACGG---TTGGGGCCGACGAAGCGGTTCAACGCGATCGACGCCAGATTG 92030 Query 129712 CAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTT 129771 |||||||| || | | ||||| ||||| || |||| ||||| || ||| | Sbjct 92031 CAGACGGCGACCTCATCAGGCGCGCTGTATTCGACGATCTCGGTGCACAGGTTGCTACAT 92090 Query 129772 TTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATG 129831 || || || || | | || ||| || || || |||||| ||||||||||| | |||| Sbjct 92091 TTGATCGTTCCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGCATCTTTGTAGACCATG 92150 Query 129832 TACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTG 129891 || |||||||| ||||| ||||| | |||||||| | | | | ||| || || | Sbjct 92151 TAGGGCGTGCCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCAAAGGTCACGGGCAAGG 92210 Query 129892 ATCTGTCTTACAAATTTGCCACATTT----CTCGTATGCCACATACAGTTGTTCAAATTC 129947 | || | || | | | | ||| ||||||| || || || ||||| || Sbjct 92211 A-CT---TGACGACGGTAGCGCTTTTCGGACTCGTATTTGGTGTAGAGCTGCTCAAACTC 92266 Query 129948 TGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCC 130007 ||| ||||| || | ||| | || ||||||| ||| |||| Sbjct 92267 CTCGCCCCAGCAATCCTCGAGACCAGGACACTCATGGGGGCACATCAGGGACCAGGTTCC 92326 Query 130008 ATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG 130067 || | |||||| || ||||| || | |||||| | ||| |||||||| || | || || Sbjct 92327 GTCGGTTTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGAAGAGGTCACG 92386 Query 130068 CGC-TTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGG 130126 || |||| || |||||||| |||| || || || |||| ||| ||| ||||| Sbjct 92387 GGCACGTTCT-TCATCGGCACCAGTGTTCTTCTTGAGATCGAGGACTTCGAAAACGTCGG 92445 Query 130127 CGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTGCCCCCTTGGTCAACGT 130186 | ||||| || || | ||| | || | || || || || || ||||||| | || Sbjct 92446 CATGCCAGGGCTCGAGATAGACGGCAAAGGCACCGGGACGCTTACCGCCTTGGTTGATGT 92505 Query 130187 GGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 || | | |||||| |||| || | ||| Sbjct 92506 AACGAGCCGTGTTGTTGAAGACGCGGAGCAT 92536 >seq594 Length=51185 Score = 113 bits (124), Expect = 4e-20 Identities = 244/365 (67%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 129505 AATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTT 129564 || || || |||| || |||| ||| | || |||||||||||| | || || ||| Sbjct 45870 AAGGTATCAGCCAGGCCCTGAACACCGATACTGATGGGTCGATGGCGCTTGTTCGACTTT 45929 Query 129565 TGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACA 129624 | || | | ||| ||||||||||| || || || ||||| || |||||| || Sbjct 45930 TCAGCTTCCGGAACGGGGTAGTAGTTGATATCAATGATCTTGTTCAAGTTCTTGGTGACT 45989 Query 129625 ATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATG---TCGACA 129681 | ||||| ||| ||| ||| | | |||| | | || || | || ||||| Sbjct 45990 GTCTTCGTGACGGCTTTCAACTTGTTGAAATCGAATTC------ATGGTTGGGGTCGACG 46043 Query 129682 AATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTAC 129741 || | || | ||||| |||| |||| |||| || |||| | | ||||||| Sbjct 46044 AAGCGGTTCAGCGCGATCGATGCCAGATTGGAGACTGCGGTTTCATCAGAGGCACTGTAT 46103 Query 129742 TCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTT 129801 || || ||| | | ||||| | | || ||| || || || | || || || || || Sbjct 46104 TCAACGATTCCTGTGCACACACTGCTGCCTTTGATAGTTCCGAGATTCTGCTGGTTGCTC 46163 Query 129802 TTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCG 129861 || ||||| ||||||||||| | |||||| |||||||| ||||||| ||| | || Sbjct 46164 TTACGATTGCAGGCATCTTTGTAGACCATGTATGGCGTGCCAGTTTCGATTTGAGCGCCG 46223 Query 129862 ACAAT 129866 ||||| Sbjct 46224 ACAAT 46228 >seq97 Length=72787 Score = 109 bits (120), Expect = 5e-19 Identities = 543/846 (64%), Gaps = 24/846 (3%) Strand=Plus/Minus Query 129534 ACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGAT 129593 ||||||||| ||||| | || || |||| ||| | | ||| || |||||||| Sbjct 70092 ACCGATGGGACGATGGCGCTTGTTCGACTTTTCAGCCTCCGGGACGGGGTAATAGTTGAT 70033 Query 129594 GTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAA 129653 ||| || || ||||| || |||||| ||| | ||||| || || ||| | | || Sbjct 70032 GTCGATGATCTTGTTCAAGTTCTTGGTGACAGTCTTCGTGACAGCCTTCAACTTGTTGAA 69973 Query 129654 ATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCA 129713 || | | || | | | | |||| || | || | ||||| |||| |||||| Sbjct 69972 ATCGAATTCACGG---TTGGGGCCGACGAAGCGGTTCAACGCGATCGACGCCAGATTGCA 69916 Query 129714 GACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTT 129773 |||||| || | | | ||||| ||||| ||||||| ||||| || || ||| Sbjct 69915 GACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCGGTGCACAGGTTGCTGCATTT 69856 Query 129774 AATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTA 129833 || || || | | || || || || || |||||| || |||||||| | |||||| Sbjct 69855 GATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGCGTCTTTGTAAAGCATGTA 69796 Query 129834 CGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGAT 129893 || ||||| ||||||||||| | || ||| | | | | || ||||||||||| Sbjct 69795 GGGGGTGCCAGTTTCGACTTGAGCGCTGATGATGTGCTTCCAGAGATCGCGAGCCTTGAT 69736 Query 129894 CTGTCTTAC--AAA--TTTGCCACATTTCTCGTATGCCACATACAGTTGTTC-AAATTCT 129948 ||| ||| | ||| || | | ||||||| | || || | || || |||| Sbjct 69735 CTG-CTTTCGGAAACGCTTCTCCGA---CTCGTATTTCGTGTAGAGCTCCTCGAACTTCT 69680 Query 129949 GAGCCGTGTACGGTGTCGAGCAACGGCG-ATTCACGCGGACACATCAAACTCCACATTCC 130007 || | | | || || | ||| | | || | || ||||||| | ||| | || Sbjct 69679 CGCCCCAGCA-GTCCTCAAG-ACCGGGGCACTCGTGGGGGCACATCAGAGACCAGGTGCC 69622 Query 130008 ATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG 130067 || | ||| || || ||||| || | |||||| | ||| || || || || | ||| || Sbjct 69621 GTCGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCCAGAGAGCATAGAAGAGATCACG 69562 Query 130068 CGC-TTTTCTATCCTCGGCACCCATGTTACGT-TTCAGTTCAAGGAAATCGTAAATGTCG 130125 || ||| ||||| ||| ||| | | | | |||| || | || || | ||||| Sbjct 69561 GGCACGCTCT-TCCTCAGCA-CCACGATTCTTCTTCATATCCATGACCTCAAAGATGTCT 69504 Query 130126 GCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCA 130182 |||||||||||||| | || || || | ||||| || ||| || || || || Sbjct 69503 GCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCAGGACGCTTGTTTCCGCCCTGATCG 69444 Query 130183 ACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCG 130242 |||| ||| | | |||||| | || || | ||| | | | || |||| ||| Sbjct 69443 ACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCCATTGGAGACTCCG 69384 Query 130243 TTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCG 130302 || | ||||| ||| || || | ||| ||||| | || || |||||| Sbjct 69383 CCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATTGAGCCCAATGCCG 69324 Query 130303 CCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACT 130361 ||| | | ||||| ||| |||| || || | | || || |||||||| |||| || Sbjct 69323 CCGGCTGACTTTGAGATCTTTGCGC-ATTGCTTCAATGTGTCGAAAATGCCATCGATGCT 69265 Query 130362 GTCTTC 130367 ||| || Sbjct 69264 GTCATC 69259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723191491100